Johnson JE - Search Results

1

A Galaxy of informatics resources for MS-based proteomics.

Mehta S, Bernt M, Chambers M, Fahrner M, Föll MC, Gruening B, Horro C, Johnson JE, Loux V, Rajczewski AT, Schilling O, Vandenbrouck Y, Gustafsson OJR, Thang WCM, Hyde C, Price G, Jagtap PD, Griffin TJ. Mehta S, et al. Among authors: johnson je. Expert Rev Proteomics. 2023 Jul-Dec;20(11):251-266. doi: 10.1080/14789450.2023.2265062. Epub 2023 Oct 30. Expert Rev Proteomics. 2023. PMID: 37787106 Review.

2

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19).

Rajczewski AT, Mehta S, Nguyen DDA, Grüning B, Johnson JE, McGowan T, Griffin TJ, Jagtap PD. Rajczewski AT, et al. Among authors: johnson je. Clin Proteomics. 2021 May 10;18(1):15. doi: 10.1186/s12014-021-09321-1. Clin Proteomics. 2021. PMID: 33971807 Free PMC article.

3

Metaproteomic analysis using the Galaxy framework.

Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Jagtap PD, et al. Among authors: johnson je. Proteomics. 2015 Oct;15(20):3553-65. doi: 10.1002/pmic.201500074. Epub 2015 Jul 24. Proteomics. 2015. PMID: 26058579

4

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD. Blank C, et al. Among authors: johnson j. Proteomes. 2018 Jan 31;6(1):7. doi: 10.3390/proteomes6010007. Proteomes. 2018. PMID: 29385081 Free PMC article.

5

Improve your Galaxy text life: The Query Tabular Tool.

Johnson JE, Kumar P, Easterly C, Esler M, Mehta S, Eschenlauer AC, Hegeman AD, Jagtap PD, Griffin TJ. Johnson JE, et al. F1000Res. 2018 Oct 5;7:1604. doi: 10.12688/f1000research.16450.2. eCollection 2018. F1000Res. 2018. PMID: 30519459 Free PMC article.

6

The Galaxy Platform for Reproducible Affinity Proteomic Mass Spectrometry Data Analysis.

Stewart PA, Kuenzi BM, Mehta S, Kumar P, Johnson JE, Jagtap P, Griffin TJ, Haura EB. Stewart PA, et al. Among authors: johnson je. Methods Mol Biol. 2019;1977:249-261. doi: 10.1007/978-1-4939-9232-4_16. Methods Mol Biol. 2019. PMID: 30980333 Free PMC article.

7

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.

McGowan T, Johnson JE, Kumar P, Sajulga R, Mehta S, Jagtap PD, Griffin TJ. McGowan T, et al. Among authors: johnson je. Gigascience. 2020 Apr 1;9(4):giaa025. doi: 10.1093/gigascience/giaa025. Gigascience. 2020. PMID: 32236523 Free PMC article.

8

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform.

Mehta S, Easterly CW, Sajulga R, Millikin RJ, Argentini A, Eguinoa I, Martens L, Shortreed MR, Smith LM, McGowan T, Kumar P, Johnson JE, Griffin TJ, Jagtap PD. Mehta S, et al. Among authors: johnson je. Proteomes. 2020 Jul 8;8(3):15. doi: 10.3390/proteomes8030015. Proteomes. 2020. PMID: 32650610 Free PMC article.

9

MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for Everyone.

Pinter N, Glätzer D, Fahrner M, Fröhlich K, Johnson J, Grüning BA, Warscheid B, Drepper F, Schilling O, Föll MC. Pinter N, et al. J Proteome Res. 2022 Jun 3;21(6):1558-1565. doi: 10.1021/acs.jproteome.2c00051. Epub 2022 May 3. J Proteome Res. 2022. PMID: 35503992

10

Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations.

Mehta S, Carvalho VM, Rajczewski AT, Pible O, Grüning BA, Johnson JE, Wagner R, Armengaud J, Griffin TJ, Jagtap PD. Mehta S, et al. Among authors: johnson je. Viruses. 2022 Oct 7;14(10):2205. doi: 10.3390/v14102205. Viruses. 2022. PMID: 36298760 Free PMC article.

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