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MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data.
Hüther P, Hagmann J, Nunn A, Kakoulidou I, Pisupati R, Langenberger D, Weigel D, Johannes F, Schultheiss SJ, Becker C. Hüther P, et al. Among authors: johannes f. Quant Plant Biol. 2022 Sep 26;3:e19. doi: 10.1017/qpb.2022.14. eCollection 2022. Quant Plant Biol. 2022. PMID: 37077980 Free PMC article.
Stochasticity in gene body methylation.
Goeldel C, Johannes F. Goeldel C, et al. Among authors: johannes f. Curr Opin Plant Biol. 2023 Oct;75:102436. doi: 10.1016/j.pbi.2023.102436. Epub 2023 Aug 17. Curr Opin Plant Biol. 2023. PMID: 37597469 Review.
Exploring the crop epigenome: a comparison of DNA methylation profiling techniques.
Agius DR, Kapazoglou A, Avramidou E, Baranek M, Carneros E, Caro E, Castiglione S, Cicatelli A, Radanovic A, Ebejer JP, Gackowski D, Guarino F, Gulyás A, Hidvégi N, Hoenicka H, Inácio V, Johannes F, Karalija E, Lieberman-Lazarovich M, Martinelli F, Maury S, Mladenov V, Morais-Cecílio L, Pecinka A, Tani E, Testillano PS, Todorov D, Valledor L, Vassileva V. Agius DR, et al. Among authors: johannes f. Front Plant Sci. 2023 May 30;14:1181039. doi: 10.3389/fpls.2023.1181039. eCollection 2023. Front Plant Sci. 2023. PMID: 37389288 Free PMC article. Review.
An evolutionary epigenetic clock in plants.
Yao N, Zhang Z, Yu L, Hazarika R, Yu C, Jang H, Smith LM, Ton J, Liu L, Stachowicz JJ, Reusch TBH, Schmitz RJ, Johannes F. Yao N, et al. Among authors: johannes f. Science. 2023 Sep 29;381(6665):1440-1445. doi: 10.1126/science.adh9443. Epub 2023 Sep 28. Science. 2023. PMID: 37769069 Free article.
An evolutionary epigenetic clock in plants.
Yao N, Zhang Z, Yu L, Hazarika R, Yu C, Jang H, Smith LM, Ton J, Liu L, Stachowicz J, Reusch T, Schmitz RJ, Johannes F. Yao N, et al. Among authors: johannes f. bioRxiv [Preprint]. 2023 Mar 16:2023.03.15.532766. doi: 10.1101/2023.03.15.532766. bioRxiv. 2023. PMID: 36993545 Free PMC article. Updated. Preprint.
DNA methylation remodeling in F1 hybrids.
Kakoulidou I, Johannes F. Kakoulidou I, et al. Among authors: johannes f. Plant J. 2024 May;118(3):671-681. doi: 10.1111/tpj.16137. Epub 2023 Mar 3. Plant J. 2024. PMID: 36752648 Review.
94 results