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Multi-level analysis of the gut-brain axis shows autism spectrum disorder-associated molecular and microbial profiles.
Morton JT, Jin DM, Mills RH, Shao Y, Rahman G, McDonald D, Zhu Q, Balaban M, Jiang Y, Cantrell K, Gonzalez A, Carmel J, Frankiensztajn LM, Martin-Brevet S, Berding K, Needham BD, Zurita MF, David M, Averina OV, Kovtun AS, Noto A, Mussap M, Wang M, Frank DN, Li E, Zhou W, Fanos V, Danilenko VN, Wall DP, Cárdenas P, Baldeón ME, Jacquemont S, Koren O, Elliott E, Xavier RJ, Mazmanian SK, Knight R, Gilbert JA, Donovan SM, Lawley TD, Carpenter B, Bonneau R, Taroncher-Oldenburg G. Morton JT, et al. Among authors: jiang y. Nat Neurosci. 2023 Jul;26(7):1208-1217. doi: 10.1038/s41593-023-01361-0. Epub 2023 Jun 26. Nat Neurosci. 2023. PMID: 37365313 Free PMC article.
Greengenes2 unifies microbial data in a single reference tree.
McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. McDonald D, et al. Among authors: jiang y. Nat Biotechnol. 2024 May;42(5):715-718. doi: 10.1038/s41587-023-01845-1. Epub 2023 Jul 27. Nat Biotechnol. 2024. PMID: 37500913 Free PMC article.
Generation of accurate, expandable phylogenomic trees with uDance.
Balaban M, Jiang Y, Zhu Q, McDonald D, Knight R, Mirarab S. Balaban M, et al. Among authors: jiang y. Nat Biotechnol. 2024 May;42(5):768-777. doi: 10.1038/s41587-023-01868-8. Epub 2023 Jul 27. Nat Biotechnol. 2024. PMID: 37500914 Free PMC article.
Author Correction: Greengenes2 unifies microbial data in a single reference tree.
McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. McDonald D, et al. Among authors: jiang y. Nat Biotechnol. 2024 May;42(5):813. doi: 10.1038/s41587-023-02026-w. Nat Biotechnol. 2024. PMID: 37853258 Free PMC article. No abstract available.
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