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Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.
Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA. Wang M, et al. Among authors: jain s. Cell. 2023 Jun 22;186(13):2839-2852.e21. doi: 10.1016/j.cell.2023.05.037. Cell. 2023. PMID: 37352836
Robust variation in infant gut microbiome assembly across a spectrum of lifestyles.
Olm MR, Dahan D, Carter MM, Merrill BD, Yu FB, Jain S, Meng X, Tripathi S, Wastyk H, Neff N, Holmes S, Sonnenburg ED, Jha AR, Sonnenburg JL. Olm MR, et al. Among authors: jain s. Science. 2022 Jun 10;376(6598):1220-1223. doi: 10.1126/science.abj2972. Epub 2022 Jun 9. Science. 2022. PMID: 35679413 Free PMC article.
Design, construction, and in vivo augmentation of a complex gut microbiome.
Cheng AG, Ho PY, Aranda-Díaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. Cheng AG, et al. Among authors: jain s. Cell. 2022 Sep 15;185(19):3617-3636.e19. doi: 10.1016/j.cell.2022.08.003. Epub 2022 Sep 6. Cell. 2022. PMID: 36070752 Free PMC article.
Mapping the T cell repertoire to a complex gut bacterial community.
Nagashima K, Zhao A, Atabakhsh K, Bae M, Blum JE, Weakley A, Jain S, Meng X, Cheng AG, Wang M, Higginbottom S, Dimas A, Murugkar P, Sattely ES, Moon JJ, Balskus EP, Fischbach MA. Nagashima K, et al. Among authors: jain s. Nature. 2023 Sep;621(7977):162-170. doi: 10.1038/s41586-023-06431-8. Epub 2023 Aug 16. Nature. 2023. PMID: 37587342 Free PMC article.
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes.
Carter MM, Olm MR, Merrill BD, Dahan D, Tripathi S, Spencer SP, Yu FB, Jain S, Neff N, Jha AR, Sonnenburg ED, Sonnenburg JL. Carter MM, et al. Among authors: jain s. Cell. 2023 Jul 6;186(14):3111-3124.e13. doi: 10.1016/j.cell.2023.05.046. Epub 2023 Jun 21. Cell. 2023. PMID: 37348505 Free article.
Discovery and engineering of the antibody response against a prominent skin commensal.
Bousbaine D, Bauman KD, Chen YE, Yu VK, Lalgudi PV, Naziripour A, Veinbachs A, Phung JL, Nguyen TTD, Swenson JM, Lee YE, Dimas A, Jain S, Meng X, Pham TPT, Zhao A, Barkal L, Gribonika I, Van Rompay KKA, Belkaid Y, Barnes CO, Fischbach MA. Bousbaine D, et al. Among authors: jain s. bioRxiv [Preprint]. 2024 Jan 23:2024.01.23.576900. doi: 10.1101/2024.01.23.576900. bioRxiv. 2024. PMID: 38328052 Free PMC article. Preprint.
Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction.
Tripathi S, Voogdt CGP, Bassler SO, Anderson M, Huang PH, Sakenova N, Capraz T, Jain S, Koumoutsi A, Bravo AM, Trotter V, Zimmerman M, Sonnenburg JL, Buie C, Typas A, Deutschbauer AM, Shiver AL, Huang KC. Tripathi S, et al. Among authors: jain s. Cell Rep. 2024 Jan 23;43(1):113517. doi: 10.1016/j.celrep.2023.113517. Epub 2023 Dec 23. Cell Rep. 2024. PMID: 38142397 Free article. Review.
Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Gut Microbes.
Merrill BD, Carter MM, Olm MR, Dahan D, Tripathi S, Spencer SP, Yu B, Jain S, Neff N, Jha AR, Sonnenburg ED, Sonnenburg JL. Merrill BD, et al. Among authors: jain s. bioRxiv [Preprint]. 2022 Oct 6:2022.03.30.486478. doi: 10.1101/2022.03.30.486478. bioRxiv. 2022. PMID: 36238714 Free PMC article. Updated. Preprint.
Diabetes, nonalcoholic fatty liver disease and obesity: What is the link?
Pustake MV, Giri P, Ganiyani MAMT, Jain S. Pustake MV, et al. Among authors: jain s. J Family Med Prim Care. 2024 Mar;13(3):1119-1120. doi: 10.4103/jfmpc.jfmpc_445_23. Epub 2024 Apr 4. J Family Med Prim Care. 2024. PMID: 38736789 Free PMC article. No abstract available.
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