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Standardization of assay representation in the Ontology for Biomedical Investigations.
Vita R, Zheng J, Jackson R, Dooley D, Overton JA, Miller MA, Berrios DC, Scheuermann RH, He Y, McGinty HK, Brochhausen M, Lin AY, Jain SB, Chibucos MC, Judkins J, Giglio MG, Feng IY, Burns G, Brush MH, Peters B, Stoeckert CJ Jr. Vita R, et al. Among authors: jackson r. Database (Oxford). 2021 Jul 9;2021:baab040. doi: 10.1093/database/baab040. Database (Oxford). 2021. PMID: 34244718 Free PMC article. Review.
An immunologically friendly classification of non-peptidic ligands.
Edwards L, Jackson R, Overton JA, Vita R, Blazeska N, Peters B, Sette A. Edwards L, et al. Among authors: jackson r. Database (Oxford). 2021 Mar 27;2021:baab014. doi: 10.1093/database/baab014. Database (Oxford). 2021. PMID: 33772585 Free PMC article.
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Jackson R, Matentzoglu N, Overton JA, Vita R, Balhoff JP, Buttigieg PL, Carbon S, Courtot M, Diehl AD, Dooley DM, Duncan WD, Harris NL, Haendel MA, Lewis SE, Natale DA, Osumi-Sutherland D, Ruttenberg A, Schriml LM, Smith B, Stoeckert CJ Jr, Vasilevsky NA, Walls RL, Zheng J, Mungall CJ, Peters B. Jackson R, et al. Database (Oxford). 2021 Oct 26;2021:baab069. doi: 10.1093/database/baab069. Database (Oxford). 2021. PMID: 34697637 Free PMC article.
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Matentzoglu N, Goutte-Gattat D, Tan SZK, Balhoff JP, Carbon S, Caron AR, Duncan WD, Flack JE, Haendel M, Harris NL, Hogan WR, Hoyt CT, Jackson RC, Kim H, Kir H, Larralde M, McMurry JA, Overton JA, Peters B, Pilgrim C, Stefancsik R, Robb SM, Toro S, Vasilevsky NA, Walls R, Mungall CJ, Osumi-Sutherland D. Matentzoglu N, et al. Among authors: jackson rc. Database (Oxford). 2022 Oct 8;2022:baac087. doi: 10.1093/database/baac087. Database (Oxford). 2022. PMID: 36208225 Free PMC article.
ROBOT: A Tool for Automating Ontology Workflows.
Jackson RC, Balhoff JP, Douglass E, Harris NL, Mungall CJ, Overton JA. Jackson RC, et al. BMC Bioinformatics. 2019 Jul 29;20(1):407. doi: 10.1186/s12859-019-3002-3. BMC Bioinformatics. 2019. PMID: 31357927 Free PMC article.
The Human Disease Ontology 2022 update.
Schriml LM, Munro JB, Schor M, Olley D, McCracken C, Felix V, Baron JA, Jackson R, Bello SM, Bearer C, Lichenstein R, Bisordi K, Dialo NC, Giglio M, Greene C. Schriml LM, et al. Among authors: jackson r. Nucleic Acids Res. 2022 Jan 7;50(D1):D1255-D1261. doi: 10.1093/nar/gkab1063. Nucleic Acids Res. 2022. PMID: 34755882 Free PMC article.
ECO: the Evidence and Conclusion Ontology, an update for 2022.
Nadendla S, Jackson R, Munro J, Quaglia F, Mészáros B, Olley D, Hobbs ET, Goralski SM, Chibucos M, Mungall CJ, Tosatto SCE, Erill I, Giglio MG. Nadendla S, et al. Among authors: jackson r. Nucleic Acids Res. 2022 Jan 7;50(D1):D1515-D1521. doi: 10.1093/nar/gkab1025. Nucleic Acids Res. 2022. PMID: 34986598 Free PMC article.
ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts.
Hobbs ET, Goralski SM, Mitchell A, Simpson A, Leka D, Kotey E, Sekira M, Munro JB, Nadendla S, Jackson R, Gonzalez-Aguirre A, Krallinger M, Giglio M, Erill I. Hobbs ET, et al. Among authors: jackson r. Front Res Metr Anal. 2021 Jul 13;6:674205. doi: 10.3389/frma.2021.674205. eCollection 2021. Front Res Metr Anal. 2021. PMID: 34327299 Free PMC article.
The Gene Ontology resource: enriching a GOld mine.
Gene Ontology Consortium. Gene Ontology Consortium. Nucleic Acids Res. 2021 Jan 8;49(D1):D325-D334. doi: 10.1093/nar/gkaa1113. Nucleic Acids Res. 2021. PMID: 33290552 Free PMC article.
5,446 results