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RAxML Grove: an empirical phylogenetic tree database.
Höhler D, Pfeiffer W, Ioannidis V, Stockinger H, Stamatakis A. Höhler D, et al. Among authors: ioannidis v. Bioinformatics. 2022 Mar 4;38(6):1741-1742. doi: 10.1093/bioinformatics/btab863. Bioinformatics. 2022. PMID: 34962976 Free PMC article.
The ISMARA client.
Artimo P, Duvaud S, Pachkov M, Ioannidis V, van Nimwegen E, Stockinger H. Artimo P, et al. Among authors: ioannidis v. F1000Res. 2016 Dec 15;5:ELIXIR-2851. doi: 10.12688/f1000research.9794.1. eCollection 2016. F1000Res. 2016. PMID: 28232860 Free PMC article.
ExPASy: SIB bioinformatics resource portal.
Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, de Castro E, Duvaud S, Flegel V, Fortier A, Gasteiger E, Grosdidier A, Hernandez C, Ioannidis V, Kuznetsov D, Liechti R, Moretti S, Mostaguir K, Redaschi N, Rossier G, Xenarios I, Stockinger H. Artimo P, et al. Among authors: ioannidis v. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W597-603. doi: 10.1093/nar/gks400. Epub 2012 May 31. Nucleic Acids Res. 2012. PMID: 22661580 Free PMC article.
Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: ioannidis v. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
Avoiding the pitfalls of gene set enrichment analysis with SetRank.
Simillion C, Liechti R, Lischer HE, Ioannidis V, Bruggmann R. Simillion C, et al. Among authors: ioannidis v. BMC Bioinformatics. 2017 Mar 4;18(1):151. doi: 10.1186/s12859-017-1571-6. BMC Bioinformatics. 2017. PMID: 28259142 Free PMC article.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L. Pagni M, et al. Among authors: ioannidis v. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W433-7. doi: 10.1093/nar/gkm352. Epub 2007 Jun 1. Nucleic Acids Res. 2007. PMID: 17545200 Free PMC article.
Extensive remodeling of DC function by rapid maturation-induced transcriptional silencing.
Seguín-Estévez Q, Dunand-Sauthier I, Lemeille S, Iseli C, Ibberson M, Ioannidis V, Schmid CD, Rousseau P, Barras E, Geinoz A, Xenarios I, Acha-Orbea H, Reith W. Seguín-Estévez Q, et al. Among authors: ioannidis v. Nucleic Acids Res. 2014 Sep;42(15):9641-55. doi: 10.1093/nar/gku674. Epub 2014 Aug 7. Nucleic Acids Res. 2014. PMID: 25104025 Free PMC article.
42 results