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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert.
Nguyen TM, Pombubpa N, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen I-MA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Pietrasiak N, Stajich JE, Hom EFY. Nguyen TM, et al. Among authors: huntemann m. Microbiol Resour Announc. 2024 Mar 12;13(3):e0098023. doi: 10.1128/mra.00980-23. Epub 2024 Feb 8. Microbiol Resour Announc. 2024. PMID: 38329355 Free PMC article.
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting.
Nguyen TM, Pombubpa N, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen I-MA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Pietrasiak N, Stajich JE, Hom EFY. Nguyen TM, et al. Among authors: huntemann m. Microbiol Resour Announc. 2024 Feb 15;13(2):e0108023. doi: 10.1128/mra.01080-23. Epub 2024 Jan 8. Microbiol Resour Announc. 2024. PMID: 38189307 Free PMC article.
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
Camargo AP, Call L, Roux S, Nayfach S, Huntemann M, Palaniappan K, Ratner A, Chu K, Mukherjeep S, Reddy TBK, Chen IA, Ivanova NN, Eloe-Fadrosh EA, Woyke T, Baltrus DA, Castañeda-Barba S, de la Cruz F, Funnell BE, Hall JPJ, Mukhopadhyay A, Rocha EPC, Stalder T, Top E, Kyrpides NC. Camargo AP, et al. Among authors: huntemann m. Nucleic Acids Res. 2024 Jan 5;52(D1):D164-D173. doi: 10.1093/nar/gkad964. Nucleic Acids Res. 2024. PMID: 37930866 Free PMC article.
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
Terabase-Scale Coassembly of a Tropical Soil Microbiome.
Riley R, Bowers RM, Camargo AP, Campbell A, Egan R, Eloe-Fadrosh EA, Foster B, Hofmeyr S, Huntemann M, Kellom M, Kimbrel JA, Oliker L, Yelick K, Pett-Ridge J, Salamov A, Varghese NJ, Clum A. Riley R, et al. Among authors: huntemann m. Microbiol Spectr. 2023 Aug 17;11(4):e0020023. doi: 10.1128/spectrum.00200-23. Epub 2023 Jun 13. Microbiol Spectr. 2023. PMID: 37310219 Free PMC article.
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.
Klonowska A, Ardley J, Moulin L, Zandberg J, Patrel D, Gollagher M, Marinova D, Reddy TBK, Varghese N, Huntemann M, Woyke T, Seshadri R, Ivanova N, Kyrpides N, Reeve W. Klonowska A, et al. Among authors: huntemann m. Front Microbiol. 2023 Feb 28;14:1082107. doi: 10.3389/fmicb.2023.1082107. eCollection 2023. Front Microbiol. 2023. PMID: 36925474 Free PMC article.
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sardà J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Göker M, Kyrpides NC, Ivanova NN. Seshadri R, et al. Among authors: huntemann m. Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14. Cell Genom. 2022. PMID: 36778052 Free PMC article.
200 results