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Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Danish Covid-19 Genome Consortium; COVID-19 Impact Project; Network for Genomic Surveillance in South Africa (NGS-SA); GISAID core curation team; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Among authors: howden bp. medRxiv [Preprint]. 2021 Dec 9:2021.08.21.21262393. doi: 10.1101/2021.08.21.21262393. medRxiv. 2021. PMID: 34462754 Free PMC article. Updated. Preprint.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Bulgarian SARS-CoV-2 sequencing group; Communicable Diseases Genomics Network (Australia and New Zealand); COVID-19 Impact Project; Danish Covid-19 Genome Consortium; Fiocruz COVID-19 Genomic Surveillance Network; GISAID core curation team; Network for Genomic Surveillance in South Africa (NGS-SA); Swiss SARS-CoV-2 Sequencing Consortium; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Among authors: howden bp. Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. Nat Commun. 2022. PMID: 36385137 Free PMC article.
Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea.
Palou T, Wilmot M, Duchene S, Porter A, Kemoi J, Suarkia D, Andersson P, Watt A, Sherry N, Seemann T, Sait M, Turharus C, Nguyen S, Schlebusch S, Thompson C, McMahon J, Vaccher S, Lin C, Esoram D, Howden BP, Susapu M. Palou T, et al. Among authors: howden bp. Virus Evol. 2022 Apr 7;8(1):veac033. doi: 10.1093/ve/veac033. eCollection 2022 Apr. Virus Evol. 2022. PMID: 35875697 Free PMC article.
Genomic surveillance for antimicrobial resistance - a One Health perspective.
Djordjevic SP, Jarocki VM, Seemann T, Cummins ML, Watt AE, Drigo B, Wyrsch ER, Reid CJ, Donner E, Howden BP. Djordjevic SP, et al. Among authors: howden bp. Nat Rev Genet. 2024 Feb;25(2):142-157. doi: 10.1038/s41576-023-00649-y. Epub 2023 Sep 25. Nat Rev Genet. 2024. PMID: 37749210 Review.
Tracking the COVID-19 pandemic in Australia using genomics.
Seemann T, Lane CR, Sherry NL, Duchene S, Gonçalves da Silva A, Caly L, Sait M, Ballard SA, Horan K, Schultz MB, Hoang T, Easton M, Dougall S, Stinear TP, Druce J, Catton M, Sutton B, van Diemen A, Alpren C, Williamson DA, Howden BP. Seemann T, et al. Among authors: howden bp. Nat Commun. 2020 Sep 1;11(1):4376. doi: 10.1038/s41467-020-18314-x. Nat Commun. 2020. PMID: 32873808 Free PMC article.
Genomic Epidemiology and Antimicrobial Resistance Mechanisms of Imported Typhoid in Australia.
Ingle DJ, Andersson P, Valcanis M, Wilmot M, Easton M, Lane C, Barden J, Gonçalves da Silva A, Seemann T, Horan K, Ballard SA, Sherry NL, Williamson DA, Howden BP. Ingle DJ, et al. Among authors: howden bp. Antimicrob Agents Chemother. 2021 Nov 17;65(12):e0120021. doi: 10.1128/AAC.01200-21. Epub 2021 Sep 20. Antimicrob Agents Chemother. 2021. PMID: 34543095 Free PMC article.
COVID-19: Integrating genomic and epidemiological data to inform public health interventions and policy in Tasmania, Australia.
Stephens N, McPherson M, Cooley L, Vanhaeften R, Wilmot M, Lane C, Harlock M, Lodo K, Castree N, Seemann T, Sait M, Ballard S, Horan K, Veitch M, Johnston F, Sherry N, Howden B. Stephens N, et al. Western Pac Surveill Response J. 2021 Dec 22;12(4):1-9. doi: 10.5365/wpsar.2021.12.4.878. eCollection 2021 Oct-Dec. Western Pac Surveill Response J. 2021. PMID: 35251740 Free PMC article.
333 results