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PhenoMeNal: processing and analysis of metabolomics data in the cloud.
Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M, de Atauri P, Ebbels TMD, Foguet C, Glen R, Gonzalez-Beltran A, Günther UL, Handakas E, Hankemeier T, Haug K, Herman S, Holub P, Izzo M, Jacob D, Johnson D, Jourdan F, Kale N, Karaman I, Khalili B, Emami Khonsari P, Kultima K, Lampa S, Larsson A, Ludwig C, Moreno P, Neumann S, Novella JA, O'Donovan C, Pearce JTM, Peluso A, Piras ME, Pireddu L, Reed MAC, Rocca-Serra P, Roger P, Rosato A, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Selivanov V, Spjuth O, Schober D, Thévenot EA, Tomasoni M, van Rijswijk M, van Vliet M, Viant MR, Weber RJM, Zanetti G, Steinbeck C. Peters K, et al. Among authors: holub p. Gigascience. 2019 Feb 1;8(2):giy149. doi: 10.1093/gigascience/giy149. Gigascience. 2019. PMID: 30535405 Free PMC article.
Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health.
Holub P, Kohlmayer F, Prasser F, Mayrhofer MT, Schlünder I, Martin GM, Casati S, Koumakis L, Wutte A, Kozera Ł, Strapagiel D, Anton G, Zanetti G, Sezerman OU, Mendy M, Valík D, Lavitrano M, Dagher G, Zatloukal K, van Ommen GB, Litton JE. Holub P, et al. Biopreserv Biobank. 2018 Apr;16(2):97-105. doi: 10.1089/bio.2017.0110. Epub 2018 Jan 23. Biopreserv Biobank. 2018. PMID: 29359962 Free PMC article. Review.
Privacy risks of whole-slide image sharing in digital pathology.
Holub P, Müller H, Bíl T, Pireddu L, Plass M, Prasser F, Schlünder I, Zatloukal K, Nenutil R, Brázdil T. Holub P, et al. Nat Commun. 2023 May 4;14(1):2577. doi: 10.1038/s41467-023-37991-y. Nat Commun. 2023. PMID: 37142591 Free PMC article.
Four simple recommendations to encourage best practices in research software.
Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Jiménez RC, et al. Among authors: holub p. F1000Res. 2017 Jun 13;6:ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017. F1000Res. 2017. PMID: 28751965 Free PMC article.
BBMRI-ERIC: the novel gateway to biobanks. From humans to humans.
Mayrhofer MT, Holub P, Wutte A, Litton JE. Mayrhofer MT, et al. Among authors: holub p. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2016 Mar;59(3):379-84. doi: 10.1007/s00103-015-2301-8. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2016. PMID: 26860601
Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events.
Eklund N, Andrianarisoa NH, van Enckevort E, Anton G, Debucquoy A, Müller H, Zaharenko L, Engels C, Ebert L, Neumann M, Geeraert J, T'Joen V, Demski H, Caboux É, Proynova R, Parodi B, Mate S, van Iperen E, Merino-Martinez R, Quinlan PR, Holub P, Silander K. Eklund N, et al. Among authors: holub p. Biopreserv Biobank. 2020 Jun;18(3):155-164. doi: 10.1089/bio.2019.0129. Epub 2020 Apr 17. Biopreserv Biobank. 2020. PMID: 32302498 Free PMC article.
BBMRI-ERIC's contributions to research and knowledge exchange on COVID-19.
Holub P, Kozera L, Florindi F, van Enckevort E, Swertz M, Reihs R, Wutte A, Valík D, Mayrhofer MT; BBMRI-ERIC community. Holub P, et al. Eur J Hum Genet. 2020 Jun;28(6):728-731. doi: 10.1038/s41431-020-0634-8. Epub 2020 May 22. Eur J Hum Genet. 2020. PMID: 32444797 Free PMC article.
69 results