Hoff KJ - Search Results

1

A 20-kb lineage-specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum.

Harting R, Starke J, Kusch H, Pöggeler S, Maurus I, Schlüter R, Landesfeind M, Bulla I, Nowrousian M, de Jonge R, Stahlhut G, Hoff KJ, Aßhauer KP, Thürmer A, Stanke M, Daniel R, Morgenstern B, Thomma BPHJ, Kronstad JW, Braus-Stromeyer SA, Braus GH. Harting R, et al. Among authors: hoff kj. Mol Plant Pathol. 2021 Aug;22(8):939-953. doi: 10.1111/mpp.13071. Epub 2021 May 5. Mol Plant Pathol. 2021. PMID: 33955130 Free PMC article.

2

Gene prediction in metagenomic fragments: a large scale machine learning approach.

Hoff KJ, Tech M, Lingner T, Daniel R, Morgenstern B, Meinicke P. Hoff KJ, et al. BMC Bioinformatics. 2008 Apr 28;9:217. doi: 10.1186/1471-2105-9-217. BMC Bioinformatics. 2008. PMID: 18442389 Free PMC article.

3

WebAUGUSTUS--a web service for training AUGUSTUS and predicting genes in eukaryotes.

Hoff KJ, Stanke M. Hoff KJ, et al. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W123-8. doi: 10.1093/nar/gkt418. Epub 2013 May 21. Nucleic Acids Res. 2013. PMID: 23700307 Free PMC article.

4

Verticillium transcription activator of adhesion Vta2 suppresses microsclerotia formation and is required for systemic infection of plant roots.

Tran VT, Braus-Stromeyer SA, Kusch H, Reusche M, Kaever A, Kühn A, Valerius O, Landesfeind M, Aßhauer K, Tech M, Hoff K, Pena-Centeno T, Stanke M, Lipka V, Braus GH. Tran VT, et al. New Phytol. 2014 Apr;202(2):565-581. doi: 10.1111/nph.12671. Epub 2014 Jan 17. New Phytol. 2014. PMID: 24433459 Free article.

5

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.

Hoff KJ, Lange S, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Bioinformatics. 2016 Mar 1;32(5):767-9. doi: 10.1093/bioinformatics/btv661. Epub 2015 Nov 11. Bioinformatics. 2016. PMID: 26559507 Free PMC article.

6

Predicting Genes in Single Genomes with AUGUSTUS.

Hoff KJ, Stanke M. Hoff KJ, et al. Curr Protoc Bioinformatics. 2019 Mar;65(1):e57. doi: 10.1002/cpbi.57. Epub 2018 Nov 22. Curr Protoc Bioinformatics. 2019. PMID: 30466165

7

Whole-Genome Annotation with BRAKER.

Hoff KJ, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Methods Mol Biol. 2019;1962:65-95. doi: 10.1007/978-1-4939-9173-0_5. Methods Mol Biol. 2019. PMID: 31020555 Free PMC article.

8

VARUS: sampling complementary RNA reads from the sequence read archive.

Stanke M, Bruhn W, Becker F, Hoff KJ. Stanke M, et al. Among authors: hoff kj. BMC Bioinformatics. 2019 Nov 8;20(1):558. doi: 10.1186/s12859-019-3182-x. BMC Bioinformatics. 2019. PMID: 31703556 Free PMC article.

9

Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23).

Petersen I, Schlüter R, Hoff KJ, Liebscher V, Bange G, Riedel K, Pané-Farré J. Petersen I, et al. Among authors: hoff kj. Sci Rep. 2020 Jan 10;10(1):125. doi: 10.1038/s41598-019-56907-9. Sci Rep. 2020. PMID: 31924851 Free PMC article.

10

Current methods for automated annotation of protein-coding genes.

Hoff KJ, Stanke M. Hoff KJ, et al. Curr Opin Insect Sci. 2015 Feb;7:8-14. doi: 10.1016/j.cois.2015.02.008. Epub 2015 Mar 7. Curr Opin Insect Sci. 2015. PMID: 32846689 Review.

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