Heckerman D - Search Results

1

Differential T-cell responses of semi-immune and susceptible malaria subjects to in silico predicted and synthetic peptides of Plasmodium falciparum.

Dinga JN, Kimbung Mbandi S, Cho-Ngwa F, Fon NP, Moliki J, Efeti RM, Nyasa BR, Anong DN, Jojic N, Heckerman D, Wang R, Titanji VP. Dinga JN, et al. Among authors: heckerman d. Acta Trop. 2014 Jul;135:104-21. doi: 10.1016/j.actatropica.2014.03.007. Epub 2014 Mar 26. Acta Trop. 2014. PMID: 24681218

2

Learning MHC I--peptide binding.

Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O. Jojic N, et al. Among authors: heckerman d. Bioinformatics. 2006 Jul 15;22(14):e227-35. doi: 10.1093/bioinformatics/btl255. Bioinformatics. 2006. PMID: 16873476

3

Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences.

Rolland M, Frahm N, Nickle DC, Jojic N, Deng W, Allen TM, Brander C, Heckerman DE, Mullins JI. Rolland M, et al. PLoS One. 2011 Mar 28;6(3):e17969. doi: 10.1371/journal.pone.0017969. PLoS One. 2011. PMID: 21464919 Free PMC article.

4

Efficient approximations for learning phylogenetic HMM models from data.

Jojic V, Jojic N, Meek C, Geiger D, Siepel A, Haussler D, Heckerman D. Jojic V, et al. Among authors: heckerman d. Bioinformatics. 2004 Aug 4;20 Suppl 1:i161-8. doi: 10.1093/bioinformatics/bth917. Bioinformatics. 2004. PMID: 15262795

5

Shift-invariant adaptive double threading: learning MHC II-peptide binding.

Zaitlen N, Reyes-Gomez M, Heckerman D, Jojic N. Zaitlen N, et al. Among authors: heckerman d. J Comput Biol. 2008 Sep;15(7):927-42. doi: 10.1089/cmb.2007.0183. J Comput Biol. 2008. PMID: 18771399

6

Coping with viral diversity in HIV vaccine design.

Nickle DC, Rolland M, Jensen MA, Pond SL, Deng W, Seligman M, Heckerman D, Mullins JI, Jojic N. Nickle DC, et al. Among authors: heckerman d. PLoS Comput Biol. 2007 Apr 27;3(4):e75. doi: 10.1371/journal.pcbi.0030075. PLoS Comput Biol. 2007. PMID: 17465674 Free PMC article.

7

Design, expression, and processing of epitomized hepatitis C virus-encoded CTL epitopes.

Yerly D, Heckerman D, Allen T, Suscovich TJ, Jojic N, Kadie C, Pichler WJ, Cerny A, Brander C. Yerly D, et al. Among authors: heckerman d. J Immunol. 2008 Nov 1;181(9):6361-70. doi: 10.4049/jimmunol.181.9.6361. J Immunol. 2008. PMID: 18941227 Free PMC article.

8

Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al.

Nickle DC, Jojic N, Heckerman D, Jojic V, Kirovski D, Rolland M, Kosakovsky Pond S, Mullins JI. Nickle DC, et al. Among authors: heckerman d. PLoS Comput Biol. 2008 Jan;4(1):e25. doi: 10.1371/journal.pcbi.0040025. PLoS Comput Biol. 2008. PMID: 18463692 Free PMC article. No abstract available.

9

Extensive HLA class I allele promiscuity among viral CTL epitopes.

Frahm N, Yusim K, Suscovich TJ, Adams S, Sidney J, Hraber P, Hewitt HS, Linde CH, Kavanagh DG, Woodberry T, Henry LM, Faircloth K, Listgarten J, Kadie C, Jojic N, Sango K, Brown NV, Pae E, Zaman MT, Bihl F, Khatri A, John M, Mallal S, Marincola FM, Walker BD, Sette A, Heckerman D, Korber BT, Brander C. Frahm N, et al. Among authors: heckerman d. Eur J Immunol. 2007 Sep;37(9):2419-33. doi: 10.1002/eji.200737365. Eur J Immunol. 2007. PMID: 17705138 Free PMC article.

10

HIV control is mediated in part by CD8+ T-cell targeting of specific epitopes.

Pereyra F, Heckerman D, Carlson JM, Kadie C, Soghoian DZ, Karel D, Goldenthal A, Davis OB, DeZiel CE, Lin T, Peng J, Piechocka A, Carrington M, Walker BD. Pereyra F, et al. Among authors: heckerman d. J Virol. 2014 Nov;88(22):12937-48. doi: 10.1128/JVI.01004-14. Epub 2014 Aug 27. J Virol. 2014. PMID: 25165115 Free PMC article.

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