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Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin.
Ben Ayed A, Akrout I, Staita K, Albert Q, Greff S, Simmler C, Ahrendt S, LaButti K, Lipzen A, He G, Savage E, Armengaud J, Kielbasa M, Navarro D, Drula E, Turbé-Doan A, Bertrand E, Lomascolo A, Chaduli D, Faulds CB, Chamkha M, Maalej A, Barry K, Grigoriev IV, Martin F, Zouari-Mechichi H, Sciara G, Mechichi T, Record E. Ben Ayed A, et al. Among authors: he g. Ecotoxicol Environ Saf. 2024 Jan 15;270:115808. doi: 10.1016/j.ecoenv.2023.115808. Epub 2024 Jan 9. Ecotoxicol Environ Saf. 2024. PMID: 38198896 Free article.
Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network.
Khosravi C, Kowalczyk JE, Chroumpi T, Battaglia E, Aguilar Pontes MV, Peng M, Wiebenga A, Ng V, Lipzen A, He G, Bauer D, Grigoriev IV, de Vries RP. Khosravi C, et al. Among authors: he g. BMC Genomics. 2019 Nov 14;20(1):853. doi: 10.1186/s12864-019-6235-7. BMC Genomics. 2019. PMID: 31726994 Free PMC article.
A comparative genomics study of 23 Aspergillus species from section Flavi.
Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: he g. Nat Commun. 2020 Feb 27;11(1):1106. doi: 10.1038/s41467-019-14051-y. Nat Commun. 2020. PMID: 32107379 Free PMC article.
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.
Ruiz-Dueñas FJ, Barrasa JM, Sánchez-García M, Camarero S, Miyauchi S, Serrano A, Linde D, Babiker R, Drula E, Ayuso-Fernández I, Pacheco R, Padilla G, Ferreira P, Barriuso J, Kellner H, Castanera R, Alfaro M, Ramírez L, Pisabarro AG, Riley R, Kuo A, Andreopoulos W, LaButti K, Pangilinan J, Tritt A, Lipzen A, He G, Yan M, Ng V, Grigoriev IV, Cullen D, Martin F, Rosso MN, Henrissat B, Hibbett D, Martínez AT. Ruiz-Dueñas FJ, et al. Among authors: he g. Mol Biol Evol. 2021 Apr 13;38(4):1428-1446. doi: 10.1093/molbev/msaa301. Mol Biol Evol. 2021. PMID: 33211093 Free PMC article.
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM. Looney B, et al. Among authors: he g. New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892. Epub 2022 Jan 16. New Phytol. 2022. PMID: 34861049 Free article.
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.
Brown JL, Swift CL, Mondo SJ, Seppala S, Salamov A, Singan V, Henrissat B, Drula E, Henske JK, Lee S, LaButti K, He G, Yan M, Barry K, Grigoriev IV, O'Malley MA. Brown JL, et al. Among authors: he g. Biotechnol Biofuels. 2021 Dec 10;14(1):234. doi: 10.1186/s13068-021-02083-w. Biotechnol Biofuels. 2021. PMID: 34893091 Free PMC article.
5,999 results