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Variable-Selection Emerges on Top in Empirical Comparison of Whole-Genome Complex-Trait Prediction Methods.
PLoS One. 2015 Oct 6;10(10):e0138903. doi: 10.1371/journal.pone.0138903. eCollection 2015.
PLoS One. 2015.
PMID: 26439851
Free PMC article.
MINT: Mutual Information Based Transductive Feature Selection for Genetic Trait Prediction.
He D, Rish I, Haws D, Parida L.
He D, et al.
IEEE/ACM Trans Comput Biol Bioinform. 2016 May-Jun;13(3):578-83. doi: 10.1109/TCBB.2015.2448071.
IEEE/ACM Trans Comput Biol Bioinform. 2016.
PMID: 27295642
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Bayes estimators for phylogenetic reconstruction.
Huggins PM, Li W, Haws D, Friedrich T, Liu J, Yoshida R.
Huggins PM, et al.
Syst Biol. 2011 Jul;60(4):528-40. doi: 10.1093/sysbio/syr021. Epub 2011 Apr 6.
Syst Biol. 2011.
PMID: 21471560
Free PMC article.
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Statistical phylogenetic tree analysis using differences of means.
Arnaoudova E, Haws DC, Huggins P, Jaromczyk JW, Moore N, Schardl CL, Yoshida R.
Arnaoudova E, et al. Among authors: haws dc.
Front Neurosci. 2010 Aug 3;4:47. doi: 10.3389/fnins.2010.00047. eCollection 2010.
Front Neurosci. 2010.
PMID: 20802801
Free PMC article.
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Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytope.
Haws DC, Hodge TL, Yoshida R.
Haws DC, et al.
Bull Math Biol. 2011 Nov;73(11):2627-48. doi: 10.1007/s11538-011-9640-x. Epub 2011 Mar 4.
Bull Math Biol. 2011.
PMID: 21373975
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A support vector machine based test for incongruence between sets of trees in tree space.
Haws DC, Huggins P, O'Neill EM, Weisrock DW, Yoshida R.
Haws DC, et al.
BMC Bioinformatics. 2012 Aug 21;13:210. doi: 10.1186/1471-2105-13-210.
BMC Bioinformatics. 2012.
PMID: 22909268
Free PMC article.
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Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci.
Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, Roe BA, O'Sullivan DM, Scott B, Tudzynski P, An Z, Arnaoudova EG, Bullock CT, Charlton ND, Chen L, Cox M, Dinkins RD, Florea S, Glenn AE, Gordon A, Güldener U, Harris DR, Hollin W, Jaromczyk J, Johnson RD, Khan AK, Leistner E, Leuchtmann A, Li C, Liu J, Liu J, Liu M, Mace W, Machado C, Nagabhyru P, Pan J, Schmid J, Sugawara K, Steiner U, Takach JE, Tanaka E, Webb JS, Wilson EV, Wiseman JL, Yoshida R, Zeng Z.
Schardl CL, et al. Among authors: haws dc.
PLoS Genet. 2013;9(2):e1003323. doi: 10.1371/journal.pgen.1003323. Epub 2013 Feb 28.
PLoS Genet. 2013.
PMID: 23468653
Free PMC article.
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