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The landscape of genomic structural variation in Indigenous Australians.
Reis ALM, Rapadas M, Hammond JM, Gamaarachchi H, Stevanovski I, Ayuputeri Kumaheri M, Chintalaphani SR, Dissanayake DSB, Siggs OM, Hewitt AW, Llamas B, Brown A, Baynam G, Mann GJ, McMorran BJ, Easteal S, Hermes A, Jenkins MR; National Centre for Indigenous Genomics; Patel HR, Deveson IW. Reis ALM, et al. Among authors: hammond jm. Nature. 2023 Dec;624(7992):602-610. doi: 10.1038/s41586-023-06842-7. Epub 2023 Dec 13. Nature. 2023. PMID: 38093003 Free PMC article.
Genopo: a nanopore sequencing analysis toolkit for portable Android devices.
Samarakoon H, Punchihewa S, Senanayake A, Hammond JM, Stevanovski I, Ferguson JM, Ragel R, Gamaarachchi H, Deveson IW. Samarakoon H, et al. Among authors: hammond jm. Commun Biol. 2020 Sep 29;3(1):538. doi: 10.1038/s42003-020-01270-z. Commun Biol. 2020. PMID: 32994472 Free PMC article.
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis.
Bull RA, Adikari TN, Ferguson JM, Hammond JM, Stevanovski I, Beukers AG, Naing Z, Yeang M, Verich A, Gamaarachchi H, Kim KW, Luciani F, Stelzer-Braid S, Eden JS, Rawlinson WD, van Hal SJ, Deveson IW. Bull RA, et al. Among authors: hammond jm. Nat Commun. 2020 Dec 9;11(1):6272. doi: 10.1038/s41467-020-20075-6. Nat Commun. 2020. PMID: 33298935 Free PMC article.
Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing.
Kim KW, Deveson IW, Pang CNI, Yeang M, Naing Z, Adikari T, Hammond JM, Stevanovski I, Beukers AG, Verich A, Yin S, McFarlane D, Wilkins MR, Stelzer-Braid S, Bull RA, Craig ME, van Hal SJ, Rawlinson WD. Kim KW, et al. Among authors: hammond jm. Sci Rep. 2021 Feb 16;11(1):3934. doi: 10.1038/s41598-021-83642-x. Sci Rep. 2021. PMID: 33594223 Free PMC article.
Fast nanopore sequencing data analysis with SLOW5.
Gamaarachchi H, Samarakoon H, Jenner SP, Ferguson JM, Amos TG, Hammond JM, Saadat H, Smith MA, Parameswaran S, Deveson IW. Gamaarachchi H, et al. Among authors: hammond jm. Nat Biotechnol. 2022 Jul;40(7):1026-1029. doi: 10.1038/s41587-021-01147-4. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980914 Free PMC article.
The retroelement Lx9 puts a brake on the immune response to virus infection.
Bartonicek N, Rouet R, Warren J, Loetsch C, Rodriguez GS, Walters S, Lin F, Zahra D, Blackburn J, Hammond JM, Reis ALM, Deveson IW, Zammit N, Zeraati M, Grey S, Christ D, Mattick JS, Chtanova T, Brink R, Dinger ME, Weatheritt RJ, Sprent J, King C. Bartonicek N, et al. Among authors: hammond jm. Nature. 2022 Aug;608(7924):757-765. doi: 10.1038/s41586-022-05054-9. Epub 2022 Aug 10. Nature. 2022. PMID: 35948641
Extensive DNA methylome rearrangement during early lamprey embryogenesis.
Angeloni A, Fissette S, Kaya D, Hammond JM, Gamaarachchi H, Deveson IW, Klose RJ, Li W, Zhang X, Bogdanovic O. Angeloni A, et al. Among authors: hammond jm. Nat Commun. 2024 Mar 4;15(1):1977. doi: 10.1038/s41467-024-46085-2. Nat Commun. 2024. PMID: 38438347 Free PMC article.
HIVepsilon-seq-scalable characterization of intact persistent proviral HIV reservoirs in women.
Barton K, Ferguson JM, Deveson IW, Falcinelli SD, James KS, Kirchherr J, Ramirez C, Gay CL, Hammond JM, Bevear B, Carswell SL, Margolis DM, Smith MA, Adimora AA, Archin NM. Barton K, et al. Among authors: hammond jm. J Virol. 2023 Nov 30;97(11):e0070523. doi: 10.1128/jvi.00705-23. Epub 2023 Oct 16. J Virol. 2023. PMID: 37843370 Free PMC article.
211 results