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Page 1
The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.
Zwanenburg A, Vallières M, Abdalah MA, Aerts HJWL, Andrearczyk V, Apte A, Ashrafinia S, Bakas S, Beukinga RJ, Boellaard R, Bogowicz M, Boldrini L, Buvat I, Cook GJR, Davatzikos C, Depeursinge A, Desseroit MC, Dinapoli N, Dinh CV, Echegaray S, El Naqa I, Fedorov AY, Gatta R, Gillies RJ, Goh V, Götz M, Guckenberger M, Ha SM, Hatt M, Isensee F, Lambin P, Leger S, Leijenaar RTH, Lenkowicz J, Lippert F, Losnegård A, Maier-Hein KH, Morin O, Müller H, Napel S, Nioche C, Orlhac F, Pati S, Pfaehler EAG, Rahmim A, Rao AUK, Scherer J, Siddique MM, Sijtsema NM, Socarras Fernandez J, Spezi E, Steenbakkers RJHM, Tanadini-Lang S, Thorwarth D, Troost EGC, Upadhaya T, Valentini V, van Dijk LV, van Griethuysen J, van Velden FHP, Whybra P, Richter C, Löck S. Zwanenburg A, et al. Among authors: ha sm. Radiology. 2020 May;295(2):328-338. doi: 10.1148/radiol.2020191145. Epub 2020 Mar 10. Radiology. 2020. PMID: 32154773 Free PMC article.
Reproducibility analysis of multi-institutional paired expert annotations and radiomic features of the Ivy Glioblastoma Atlas Project (Ivy GAP) dataset.
Pati S, Verma R, Akbari H, Bilello M, Hill VB, Sako C, Correa R, Beig N, Venet L, Thakur S, Serai P, Ha SM, Blake GD, Shinohara RT, Tiwari P, Bakas S. Pati S, et al. Among authors: ha sm. Med Phys. 2020 Dec;47(12):6039-6052. doi: 10.1002/mp.14556. Epub 2020 Dec 4. Med Phys. 2020. PMID: 33118182 Free PMC article.
The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics.
Bakas S, Sako C, Akbari H, Bilello M, Sotiras A, Shukla G, Rudie JD, Santamaría NF, Kazerooni AF, Pati S, Rathore S, Mamourian E, Ha SM, Parker W, Doshi J, Baid U, Bergman M, Binder ZA, Verma R, Lustig RA, Desai AS, Bagley SJ, Mourelatos Z, Morrissette J, Watt CD, Brem S, Wolf RL, Melhem ER, Nasrallah MP, Mohan S, O'Rourke DM, Davatzikos C. Bakas S, et al. Among authors: ha sm. Sci Data. 2022 Jul 29;9(1):453. doi: 10.1038/s41597-022-01560-7. Sci Data. 2022. PMID: 35906241 Free PMC article.
Cancer Imaging Phenomics via CaPTk: Multi-Institutional Prediction of Progression-Free Survival and Pattern of Recurrence in Glioblastoma.
Fathi Kazerooni A, Akbari H, Shukla G, Badve C, Rudie JD, Sako C, Rathore S, Bakas S, Pati S, Singh A, Bergman M, Ha SM, Kontos D, Nasrallah M, Bagley SJ, Lustig RA, O'Rourke DM, Sloan AE, Barnholtz-Sloan JS, Mohan S, Bilello M, Davatzikos C. Fathi Kazerooni A, et al. Among authors: ha sm. JCO Clin Cancer Inform. 2020 Mar;4:234-244. doi: 10.1200/CCI.19.00121. JCO Clin Cancer Inform. 2020. PMID: 32191542 Free PMC article.
Skull-Stripping of Glioblastoma MRI Scans Using 3D Deep Learning.
Thakur SP, Doshi J, Pati S, Ha SM, Sako C, Talbar S, Kulkarni U, Davatzikos C, Erus G, Bakas S. Thakur SP, et al. Among authors: ha sm. Brainlesion. 2019 Oct;11992:57-68. doi: 10.1007/978-3-030-46640-4_6. Epub 2020 May 19. Brainlesion. 2019. PMID: 32577629 Free PMC article.
Brain extraction on MRI scans in presence of diffuse glioma: Multi-institutional performance evaluation of deep learning methods and robust modality-agnostic training.
Thakur S, Doshi J, Pati S, Rathore S, Sako C, Bilello M, Ha SM, Shukla G, Flanders A, Kotrotsou A, Milchenko M, Liem S, Alexander GS, Lombardo J, Palmer JD, LaMontagne P, Nazeri A, Talbar S, Kulkarni U, Marcus D, Colen R, Davatzikos C, Erus G, Bakas S. Thakur S, et al. Among authors: ha sm. Neuroimage. 2020 Oct 15;220:117081. doi: 10.1016/j.neuroimage.2020.117081. Epub 2020 Jun 27. Neuroimage. 2020. PMID: 32603860 Free PMC article.
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview.
Pati S, Singh A, Rathore S, Gastounioti A, Bergman M, Ngo P, Ha SM, Bounias D, Minock J, Murphy G, Li H, Bhattarai A, Wolf A, Sridaran P, Kalarot R, Akbari H, Sotiras A, Thakur SP, Verma R, Shinohara RT, Yushkevich P, Fan Y, Kontos D, Davatzikos C, Bakas S. Pati S, et al. Among authors: ha sm. Brainlesion. 2020;11993:380-394. doi: 10.1007/978-3-030-46643-5_38. Epub 2020 May 19. Brainlesion. 2020. PMID: 32754723 Free PMC article.
Epidermal Growth Factor Receptor Extracellular Domain Mutations in Glioblastoma Present Opportunities for Clinical Imaging and Therapeutic Development.
Binder ZA, Thorne AH, Bakas S, Wileyto EP, Bilello M, Akbari H, Rathore S, Ha SM, Zhang L, Ferguson CJ, Dahiya S, Bi WL, Reardon DA, Idbaih A, Felsberg J, Hentschel B, Weller M, Bagley SJ, Morrissette JJD, Nasrallah MP, Ma J, Zanca C, Scott AM, Orellana L, Davatzikos C, Furnari FB, O'Rourke DM. Binder ZA, et al. Among authors: ha sm. Cancer Cell. 2018 Jul 9;34(1):163-177.e7. doi: 10.1016/j.ccell.2018.06.006. Cancer Cell. 2018. PMID: 29990498 Free PMC article.
Data-driven decomposition and staging of flortaucipir uptake in Alzheimer's disease.
Earnest T, Bani A, Ha SM, Hobbs DA, Kothapalli D, Yang B, Lee JJ, Benzinger TLS, Gordon BA, Sotiras A; Alzheimer's Disease Neuroimaging Initiative. Earnest T, et al. Among authors: ha sm. Alzheimers Dement. 2024 Apr 29. doi: 10.1002/alz.13769. Online ahead of print. Alzheimers Dement. 2024. PMID: 38683905
175 results