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Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.
Thagaard J, Broeckx G, Page DB, Jahangir CA, Verbandt S, Kos Z, Gupta R, Khiroya R, Abduljabbar K, Acosta Haab G, Acs B, Akturk G, Almeida JS, Alvarado-Cabrero I, Amgad M, Azmoudeh-Ardalan F, Badve S, Baharun NB, Balslev E, Bellolio ER, Bheemaraju V, Blenman KR, Botinelly Mendonça Fujimoto L, Bouchmaa N, Burgues O, Chardas A, Chon U Cheang M, Ciompi F, Cooper LA, Coosemans A, Corredor G, Dahl AB, Dantas Portela FL, Deman F, Demaria S, Doré Hansen J, Dudgeon SN, Ebstrup T, Elghazawy M, Fernandez-Martín C, Fox SB, Gallagher WM, Giltnane JM, Gnjatic S, Gonzalez-Ericsson PI, Grigoriadis A, Halama N, Hanna MG, Harbhajanka A, Hart SN, Hartman J, Hauberg S, Hewitt S, Hida AI, Horlings HM, Husain Z, Hytopoulos E, Irshad S, Janssen EA, Kahila M, Kataoka TR, Kawaguchi K, Kharidehal D, Khramtsov AI, Kiraz U, Kirtani P, Kodach LL, Korski K, Kovács A, Laenkholm AV, Lang-Schwarz C, Larsimont D, Lennerz JK, Lerousseau M, Li X, Ly A, Madabhushi A, Maley SK, Manur Narasimhamurthy V, Marks DK, McDonald ES, Mehrotra R, Michiels S, Minhas FUAA, Mittal S, Moore DA, Mushtaq S, Nighat H, Papathomas T, Penault-Llorca F, Perera RD, Pinard CJ, Pinto-Cardenas JC, Pruneri G, Pusztai L, Rahman A, Rajpo… See abstract for full author list ➔ Thagaard J, et al. Among authors: gupta r. J Pathol. 2023 Aug;260(5):498-513. doi: 10.1002/path.6155. Epub 2023 Aug 23. J Pathol. 2023. PMID: 37608772 Free PMC article. Review.
Methods for Segmentation and Classification of Digital Microscopy Tissue Images.
Vu QD, Graham S, Kurc T, To MNN, Shaban M, Qaiser T, Koohbanani NA, Khurram SA, Kalpathy-Cramer J, Zhao T, Gupta R, Kwak JT, Rajpoot N, Saltz J, Farahani K. Vu QD, et al. Among authors: gupta r. Front Bioeng Biotechnol. 2019 Apr 2;7:53. doi: 10.3389/fbioe.2019.00053. eCollection 2019. Front Bioeng Biotechnol. 2019. PMID: 31001524 Free PMC article.
Deep Learning on Electronic Health Records to Improve Disease Coding Accuracy.
Rashidian S, Hajagos J, Moffitt RA, Wang F, Noel KM, Gupta RR, Tharakan MA, Saltz JH, Saltz MM. Rashidian S, et al. Among authors: gupta rr. AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:620-629. eCollection 2019. AMIA Jt Summits Transl Sci Proc. 2019. PMID: 31259017 Free PMC article.
Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor-Infiltrating Lymphocytes in Invasive Breast Cancer.
Le H, Gupta R, Hou L, Abousamra S, Fassler D, Torre-Healy L, Moffitt RA, Kurc T, Samaras D, Batiste R, Zhao T, Rao A, Van Dyke AL, Sharma A, Bremer E, Almeida JS, Saltz J. Le H, et al. Among authors: gupta r. Am J Pathol. 2020 Jul;190(7):1491-1504. doi: 10.1016/j.ajpath.2020.03.012. Epub 2020 Apr 8. Am J Pathol. 2020. PMID: 32277893 Free PMC article.
Automated digital TIL analysis (ADTA) adds prognostic value to standard assessment of depth and ulceration in primary melanoma.
Moore MR, Friesner ID, Rizk EM, Fullerton BT, Mondal M, Trager MH, Mendelson K, Chikeka I, Kurc T, Gupta R, Rohr BR, Robinson EJ, Acs B, Chang R, Kluger H, Taback B, Geskin LJ, Horst B, Gardner K, Niedt G, Celebi JT, Gartrell-Corrado RD, Messina J, Ferringer T, Rimm DL, Saltz J, Wang J, Vanguri R, Saenger YM. Moore MR, et al. Among authors: gupta r. Sci Rep. 2021 Feb 2;11(1):2809. doi: 10.1038/s41598-021-82305-1. Sci Rep. 2021. PMID: 33531581 Free PMC article.
Robust Histopathology Image Analysis: to Label or to Synthesize?
Hou L, Agarwal A, Samaras D, Kurc TM, Gupta RR, Saltz JH. Hou L, et al. Among authors: gupta rr. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2019 Jun;2019:8533-8542. doi: 10.1109/CVPR.2019.00873. Epub 2020 Jan 9. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2019. PMID: 34025103 Free PMC article.
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