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DNA sequencing in the classroom: complete genome sequence of two earwig (Dermaptera; Insecta) species.
Kobayashi S, Maldonado JE, Gaete A, Araya I, Aguado-Norese C, Cumplido N, Díaz S, Espinoza A, Fernández E, Gajardo F, González-Ordenes F, Hauyon K, Maldonado P, Maldonado R, Pochet I, Riveros A, Sandoval P, Sepúlveda-González A, Stuardo C, Tapia-Reyes P, Thornton C, Undurraga S, Varas M, Valdivieso C; School Earwig Genome Consortium; Gutiérrez RA, Orellana A, Montecino M, Maass A, González M, Allende ML, Hodar C, Irles P. Kobayashi S, et al. Among authors: gonzalez ordenes f. Biol Res. 2023 Feb 17;56(1):6. doi: 10.1186/s40659-023-00414-9. Biol Res. 2023. PMID: 36797803 Free PMC article.
Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases.
Castro-Fernandez V, Herrera-Morande A, Zamora R, Merino F, Gonzalez-Ordenes F, Padilla-Salinas F, Pereira HM, Brandão-Neto J, Garratt RC, Guixe V. Castro-Fernandez V, et al. Among authors: gonzalez ordenes f. J Biol Chem. 2017 Sep 22;292(38):15598-15610. doi: 10.1074/jbc.M117.790865. Epub 2017 Jul 18. J Biol Chem. 2017. PMID: 28726643 Free PMC article.
Kinetic characterization and phylogenetic analysis of human ADP-dependent glucokinase reveal new insights into its regulatory properties.
Herrera-Morandé A, Vallejos-Baccelliere G, Cea PA, Zamora RA, Cid D, Maturana P, González-Ordenes F, Castro-Fernández V, Guixé V. Herrera-Morandé A, et al. Among authors: gonzalez ordenes f. Arch Biochem Biophys. 2023 Jun;741:109602. doi: 10.1016/j.abb.2023.109602. Epub 2023 Apr 19. Arch Biochem Biophys. 2023. PMID: 37084804
Crystal structure and molecular dynamics simulations of a promiscuous ancestor reveal residues and an epistatic interaction involved in substrate binding and catalysis in the ATP-dependent vitamin kinase family members.
Gonzalez-Ordenes F, Bravo-Moraga F, Gonzalez E, Hernandez-Cabello L, Alzate-Morales J, Guixé V, Castro-Fernandez V. Gonzalez-Ordenes F, et al. Protein Sci. 2021 Apr;30(4):842-854. doi: 10.1002/pro.4040. Epub 2021 Feb 17. Protein Sci. 2021. PMID: 33555078 Free PMC article.
Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases.
Castro-Fernandez V, Herrera-Morande A, Zamora R, Merino F, Gonzalez-Ordenes F, Padilla-Salinas F, Pereira HM, Brandão-Neto J, Garratt RC, Guixe V. Castro-Fernandez V, et al. Among authors: gonzalez ordenes f. J Biol Chem. 2017 Dec 22;292(51):21218. doi: 10.1074/jbc.AAC117.001147. J Biol Chem. 2017. PMID: 29273585 Free PMC article. No abstract available.