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An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
Sci Rep. 2018 Jul 2;8(1):9939. doi: 10.1038/s41598-018-26812-8.
Sci Rep. 2018.
PMID: 29967418
Free PMC article.
Prediction of DNA and RNA structure with the NARES-2P force field and conformational space annealing.
Sieradzan AK , Golon Ł , Liwo A .
Sieradzan AK , et al. Among authors: golon l.
Phys Chem Chem Phys. 2018 Jul 25;20(29):19656-19663. doi: 10.1039/c8cp03018a.
Phys Chem Chem Phys. 2018.
PMID: 30014063
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Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.
Lubecka EA, Karczyńska AS, Lipska AG, Sieradzan AK, Ziȩba K, Sikorska C, Uciechowska U, Samsonov SA, Krupa P, Mozolewska MA, Golon Ł, Giełdoń A, Czaplewski C, Ślusarz R, Ślusarz M, Crivelli SN, Liwo A.
Lubecka EA, et al. Among authors: golon l.
J Mol Graph Model. 2019 Nov;92:154-166. doi: 10.1016/j.jmgm.2019.07.013. Epub 2019 Jul 26.
J Mol Graph Model. 2019.
PMID: 31376733
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Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkūnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Hon…
See abstract for full author list ➔
Lensink MF, et al. Among authors: golon l.
Proteins. 2019 Dec;87(12):1200-1221. doi: 10.1002/prot.25838. Epub 2019 Oct 25.
Proteins. 2019.
PMID: 31612567
Free PMC article.
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Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers.
Liwo A, Czaplewski C, Sieradzan AK, Lubecka EA, Lipska AG, Golon Ł, Karczyńska A, Krupa P, Mozolewska MA, Makowski M, Ganzynkowicz R, Giełdoń A, Maciejczyk M.
Liwo A, et al. Among authors: golon l.
Prog Mol Biol Transl Sci. 2020;170:73-122. doi: 10.1016/bs.pmbts.2019.12.004. Epub 2020 Feb 24.
Prog Mol Biol Transl Sci. 2020.
PMID: 32145953
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The radiosensitivity of 5- and 6-bromocytidine derivatives--electron induced DNA degradation.
Chomicz L, Golon Ł, Rak J.
Chomicz L, et al. Among authors: golon l.
Phys Chem Chem Phys. 2014 Sep 28;16(36):19424-8. doi: 10.1039/c4cp03139c.
Phys Chem Chem Phys. 2014.
PMID: 25102433
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Mechanisms of Damage to DNA Labeled with Electrophilic Nucleobases Induced by Ionizing or UV Radiation.
Rak J, Chomicz L, Wiczk J, Westphal K, Zdrowowicz M, Wityk P, Żyndul M, Makurat S, Golon Ł.
Rak J, et al. Among authors: golon l.
J Phys Chem B. 2015 Jul 2;119(26):8227-38. doi: 10.1021/acs.jpcb.5b03948. Epub 2015 Jun 24.
J Phys Chem B. 2015.
PMID: 26061614
Review.
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