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The era of reference genomes in conservation genomics.
Formenti G, Theissinger K, Fernandes C, Bista I, Bombarely A, Bleidorn C, Ciofi C, Crottini A, Godoy JA, Höglund J, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, Pampoulie C, Ruiz-López MJ, Svardal H, Theofanopoulou C, de Vries J, Waldvogel AM, Zhang G, Mazzoni CJ, Jarvis ED, Bálint M; European Reference Genome Atlas (ERGA) Consortium. Formenti G, et al. Among authors: godoy ja. Trends Ecol Evol. 2022 Mar;37(3):197-202. doi: 10.1016/j.tree.2021.11.008. Epub 2022 Jan 24. Trends Ecol Evol. 2022. PMID: 35086739 Free article.
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.
Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Albà MM, Gabaldón T, Alioto T, Godoy JA. Abascal F, et al. Among authors: godoy ja. Genome Biol. 2016 Dec 14;17(1):251. doi: 10.1186/s13059-016-1090-1. Genome Biol. 2016. PMID: 27964752 Free PMC article.
Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts.
Lucena-Perez M, Marmesat E, Kleinman-Ruiz D, Martínez-Cruz B, Węcek K, Saveljev AP, Seryodkin IV, Okhlopkov I, Dvornikov MG, Ozolins J, Galsandorj N, Paunovic M, Ratkiewicz M, Schmidt K, Godoy JA. Lucena-Perez M, et al. Among authors: godoy ja. Mol Ecol. 2020 Feb;29(4):812-828. doi: 10.1111/mec.15366. Epub 2020 Feb 23. Mol Ecol. 2020. PMID: 31995648 Free PMC article.
Monitoring of species' genetic diversity in Europe varies greatly and overlooks potential climate change impacts.
Pearman PB, Broennimann O, Aavik T, Albayrak T, Alves PC, Aravanopoulos FA, Bertola LD, Biedrzycka A, Buzan E, Cubric-Curik V, Djan M, Fedorca A, Fuentes-Pardo AP, Fussi B, Godoy JA, Gugerli F, Hoban S, Holderegger R, Hvilsom C, Iacolina L, Kalamujic Stroil B, Klinga P, Konopiński MK, Kopatz A, Laikre L, Lopes-Fernandes M, McMahon BJ, Mergeay J, Neophytou C, Pálsson S, Paz-Vinas I, Posledovich D, Primmer CR, Raeymaekers JAM, Rinkevich B, Rolečková B, Ruņģis D, Schuerz L, Segelbacher G, Kavčič Sonnenschein K, Stefanovic M, Thurfjell H, Träger S, Tsvetkov IN, Velickovic N, Vergeer P, Vernesi C, Vilà C, Westergren M, Zachos FE, Guisan A, Bruford M. Pearman PB, et al. Among authors: godoy ja. Nat Ecol Evol. 2024 Feb;8(2):267-281. doi: 10.1038/s41559-023-02260-0. Epub 2024 Jan 15. Nat Ecol Evol. 2024. PMID: 38225425 Free PMC article.
Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA.
Casas-Marce M, Marmesat E, Soriano L, Martínez-Cruz B, Lucena-Perez M, Nocete F, Rodríguez-Hidalgo A, Canals A, Nadal J, Detry C, Bernáldez-Sánchez E, Fernández-Rodríguez C, Pérez-Ripoll M, Stiller M, Hofreiter M, Rodríguez A, Revilla E, Delibes M, Godoy JA. Casas-Marce M, et al. Among authors: godoy ja. Mol Biol Evol. 2017 Nov 1;34(11):2893-2907. doi: 10.1093/molbev/msx222. Mol Biol Evol. 2017. PMID: 28962023 Free PMC article.
123 results