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SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Among authors: gillespie cs. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
Towards an e-biology of ageing: integrating theory and data.
Kirkwood TB, Boys RJ, Gillespie CS, Proctor CJ, Shanley DP, Wilkinson DJ. Kirkwood TB, et al. Among authors: gillespie cs. Nat Rev Mol Cell Biol. 2003 Mar;4(3):243-9. doi: 10.1038/nrm1051. Nat Rev Mol Cell Biol. 2003. PMID: 12612643
A mathematical model of ageing in yeast.
Gillespie CS, Proctor CJ, Boys RJ, Shanley DP, Wilkinson DJ, Kirkwood TB. Gillespie CS, et al. J Theor Biol. 2004 Jul 21;229(2):189-96. doi: 10.1016/j.jtbi.2004.03.015. J Theor Biol. 2004. PMID: 15207474
Modelling the actions of chaperones and their role in ageing.
Proctor CJ, Soti C, Boys RJ, Gillespie CS, Shanley DP, Wilkinson DJ, Kirkwood TB. Proctor CJ, et al. Among authors: gillespie cs. Mech Ageing Dev. 2005 Jan;126(1):119-31. doi: 10.1016/j.mad.2004.09.031. Mech Ageing Dev. 2005. PMID: 15610770
Tools for the SBML Community.
Gillespie CS, Wilkinson DJ, Proctor CJ, Shanley DP, Boys RJ, Kirkwood TB. Gillespie CS, et al. Bioinformatics. 2006 Mar 1;22(5):628-9. doi: 10.1093/bioinformatics/btk042. Epub 2006 Jan 12. Bioinformatics. 2006. PMID: 16410323
Modelling the checkpoint response to telomere uncapping in budding yeast.
Proctor CJ, Lydall DA, Boys RJ, Gillespie CS, Shanley DP, Wilkinson DJ, Kirkwood TB. Proctor CJ, et al. Among authors: gillespie cs. J R Soc Interface. 2007 Feb 22;4(12):73-90. doi: 10.1098/rsif.2006.0148. J R Soc Interface. 2007. PMID: 17015293 Free PMC article.
The SBML discrete stochastic models test suite.
Evans TW, Gillespie CS, Wilkinson DJ. Evans TW, et al. Among authors: gillespie cs. Bioinformatics. 2008 Jan 15;24(2):285-6. doi: 10.1093/bioinformatics/btm566. Epub 2007 Nov 19. Bioinformatics. 2008. PMID: 18025005
113 results