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An open source knowledge graph ecosystem for the life sciences.
Callahan TJ, Tripodi IJ, Stefanski AL, Cappelletti L, Taneja SB, Wyrwa JM, Casiraghi E, Matentzoglu NA, Reese J, Silverstein JC, Hoyt CT, Boyce RD, Malec SA, Unni DR, Joachimiak MP, Robinson PN, Mungall CJ, Cavalleri E, Fontana T, Valentini G, Mesiti M, Gillenwater LA, Santangelo B, Vasilevsky NA, Hoehndorf R, Bennett TD, Ryan PB, Hripcsak G, Kahn MG, Bada M, Baumgartner WA Jr, Hunter LE. Callahan TJ, et al. Among authors: gillenwater la. Sci Data. 2024 Apr 11;11(1):363. doi: 10.1038/s41597-024-03171-w. Sci Data. 2024. PMID: 38605048 Free PMC article.
Molecular cartooning with knowledge graphs.
Santangelo BE, Gillenwater LA, Salem NM, Hunter LE. Santangelo BE, et al. Among authors: gillenwater la. Front Bioinform. 2022 Dec 8;2:1054578. doi: 10.3389/fbinf.2022.1054578. eCollection 2022. Front Bioinform. 2022. PMID: 36568701 Free PMC article.
Multi-omics subtyping pipeline for chronic obstructive pulmonary disease.
Gillenwater LA, Helmi S, Stene E, Pratte KA, Zhuang Y, Schuyler RP, Lange L, Castaldi PJ, Hersh CP, Banaei-Kashani F, Bowler RP, Kechris KJ. Gillenwater LA, et al. PLoS One. 2021 Aug 25;16(8):e0255337. doi: 10.1371/journal.pone.0255337. eCollection 2021. PLoS One. 2021. PMID: 34432807 Free PMC article.
Plasma Metabolomic Signatures of Chronic Obstructive Pulmonary Disease and the Impact of Genetic Variants on Phenotype-Driven Modules.
Gillenwater LA, Pratte KA, Hobbs BD, Cho MH, Zhuang Y, Halper-Stromberg E, Cruickshank-Quinn C, Reisdorph N, Petrache I, Labaki WW, O'Neal WK, Ortega VE, Jones DP, Uppal K, Jacobson S, Michelotti G, Wendt CH, Kechris KJ, Bowler RP. Gillenwater LA, et al. Netw Syst Med. 2020 Dec 1;3(1):159-181. doi: 10.1089/nsm.2020.0009. Epub 2020 Dec 31. Netw Syst Med. 2020. PMID: 33987620 Free PMC article.
Soluble receptor for advanced glycation end products (sRAGE) as a biomarker of COPD.
Pratte KA, Curtis JL, Kechris K, Couper D, Cho MH, Silverman EK, DeMeo DL, Sciurba FC, Zhang Y, Ortega VE, O'Neal WK, Gillenwater LA, Lynch DA, Hoffman EA, Newell JD Jr, Comellas AP, Castaldi PJ, Miller BE, Pouwels SD, Hacken NHTT, Bischoff R, Klont F, Woodruff PG, Paine R, Barr RG, Hoidal J, Doerschuk CM, Charbonnier JP, Sung R, Locantore N, Yonchuk JG, Jacobson S, Tal-Singer R, Merrill D, Bowler RP. Pratte KA, et al. Among authors: gillenwater la. Respir Res. 2021 Apr 27;22(1):127. doi: 10.1186/s12931-021-01686-z. Respir Res. 2021. PMID: 33906653 Free PMC article.
IGSF3 mutation identified in patient with severe COPD alters cell function and motility.
Schweitzer KS, Jinawath N, Yonescu R, Ni K, Rush N, Charoensawan V, Bronova I, Berdyshev E, Leach SM, Gillenwater LA, Bowler RP, Pearse DB, Griffin CA, Petrache I. Schweitzer KS, et al. Among authors: gillenwater la. JCI Insight. 2020 Jul 23;5(14):e138101. doi: 10.1172/jci.insight.138101. JCI Insight. 2020. PMID: 32573489 Free PMC article.
Comparison of Proteomic Assessment Methods in Multiple Cohort Studies.
Raffield LM, Dang H, Pratte KA, Jacobson S, Gillenwater LA, Ampleford E, Barjaktarevic I, Basta P, Clish CB, Comellas AP, Cornell E, Curtis JL, Doerschuk C, Durda P, Emson C, Freeman CM, Guo X, Hastie AT, Hawkins GA, Herrera J, Johnson WC, Labaki WW, Liu Y, Masters B, Miller M, Ortega VE, Papanicolaou G, Peters S, Taylor KD, Rich SS, Rotter JI, Auer P, Reiner AP, Tracy RP, Ngo D, Gerszten RE, O'Neal WK, Bowler RP; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium. Raffield LM, et al. Among authors: gillenwater la. Proteomics. 2020 Jun;20(12):e1900278. doi: 10.1002/pmic.201900278. Proteomics. 2020. PMID: 32386347 Free PMC article.