Gifford D - Search Results

1

Ranking reprogramming factors for cell differentiation.

Hammelman J, Patel T, Closser M, Wichterle H, Gifford D. Hammelman J, et al. Among authors: gifford d. Nat Methods. 2022 Jul;19(7):812-822. doi: 10.1038/s41592-022-01522-2. Epub 2022 Jun 16. Nat Methods. 2022. PMID: 35710610 Free PMC article.

2

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Bar-Joseph Z, et al. Among authors: gifford dk. Nat Biotechnol. 2003 Nov;21(11):1337-42. doi: 10.1038/nbt890. Epub 2003 Oct 12. Nat Biotechnol. 2003. PMID: 14555958 Free article.

3

Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Boyer LA, Plath K, Zeitlinger J, Brambrink T, Medeiros LA, Lee TI, Levine SS, Wernig M, Tajonar A, Ray MK, Bell GW, Otte AP, Vidal M, Gifford DK, Young RA, Jaenisch R. Boyer LA, et al. Nature. 2006 May 18;441(7091):349-53. doi: 10.1038/nature04733. Epub 2006 Apr 19. Nature. 2006. PMID: 16625203

4

High-resolution computational models of genome binding events.

Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Qi Y, et al. Among authors: gifford dk. Nat Biotechnol. 2006 Aug;24(8):963-70. doi: 10.1038/nbt1233. Nat Biotechnol. 2006. PMID: 16900145

5

Global control of motor neuron topography mediated by the repressive actions of a single hox gene.

Jung H, Lacombe J, Mazzoni EO, Liem KF Jr, Grinstein J, Mahony S, Mukhopadhyay D, Gifford DK, Young RA, Anderson KV, Wichterle H, Dasen JS. Jung H, et al. Among authors: gifford dk. Neuron. 2010 Sep 9;67(5):781-96. doi: 10.1016/j.neuron.2010.08.008. Neuron. 2010. PMID: 20826310 Free PMC article.

6

Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis.

Mahony S, Mazzoni EO, McCuine S, Young RA, Wichterle H, Gifford DK. Mahony S, et al. Genome Biol. 2011;12(1):R2. doi: 10.1186/gb-2011-12-1-r2. Epub 2011 Jan 13. Genome Biol. 2011. PMID: 21232103 Free PMC article.

7

Embryonic stem cell-based mapping of developmental transcriptional programs.

Mazzoni EO, Mahony S, Iacovino M, Morrison CA, Mountoufaris G, Closser M, Whyte WA, Young RA, Kyba M, Gifford DK, Wichterle H. Mazzoni EO, et al. Nat Methods. 2011 Nov 13;8(12):1056-8. doi: 10.1038/nmeth.1775. Nat Methods. 2011. PMID: 22081127 Free PMC article.

8

Lineage-based identification of cellular states and expression programs.

Hashimoto T, Jaakkola T, Sherwood R, Mazzoni EO, Wichterle H, Gifford D. Hashimoto T, et al. Among authors: gifford d. Bioinformatics. 2012 Jun 15;28(12):i250-7. doi: 10.1093/bioinformatics/bts204. Bioinformatics. 2012. PMID: 22689769 Free PMC article.

9

Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity.

Mazzoni EO, Mahony S, Closser M, Morrison CA, Nedelec S, Williams DJ, An D, Gifford DK, Wichterle H. Mazzoni EO, et al. Among authors: gifford dk. Nat Neurosci. 2013 Sep;16(9):1219-27. doi: 10.1038/nn.3467. Epub 2013 Jul 21. Nat Neurosci. 2013. PMID: 23872598 Free PMC article.

10

Neuroscience. Mapping neuronal diversity one cell at a time.

Wichterle H, Gifford D, Mazzoni E. Wichterle H, et al. Among authors: gifford d. Science. 2013 Aug 16;341(6147):726-7. doi: 10.1126/science.1235884. Science. 2013. PMID: 23950522 No abstract available.

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