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Deep Panning: steps towards probing the IgOme.
Ryvkin A, Ashkenazy H, Smelyanski L, Kaplan G, Penn O, Weiss-Ottolenghi Y, Privman E, Ngam PB, Woodward JE, May GD, Bell C, Pupko T, Gershoni JM. Ryvkin A, et al. Among authors: gershoni jm. PLoS One. 2012;7(8):e41469. doi: 10.1371/journal.pone.0041469. Epub 2012 Aug 1. PLoS One. 2012. PMID: 22870226 Free PMC article.
Motifier: An IgOme Profiler Based on Peptide Motifs Using Machine Learning.
Ashkenazy H, Avram O, Ryvkin A, Roitburd-Berman A, Weiss-Ottolenghi Y, Hada-Neeman S, Gershoni JM, Pupko T. Ashkenazy H, et al. Among authors: gershoni jm. J Mol Biol. 2021 Jul 23;433(15):167071. doi: 10.1016/j.jmb.2021.167071. Epub 2021 May 28. J Mol Biol. 2021. PMID: 34052285 Free PMC article.
Profiling the IgOme: meeting the challenge.
Weiss-Ottolenghi Y, Gershoni JM. Weiss-Ottolenghi Y, et al. Among authors: gershoni jm. FEBS Lett. 2014 Jan 21;588(2):318-25. doi: 10.1016/j.febslet.2013.11.005. Epub 2013 Nov 12. FEBS Lett. 2014. PMID: 24239539 Free PMC article. Review.
Computational characterization of B-cell epitopes.
Rubinstein ND, Mayrose I, Halperin D, Yekutieli D, Gershoni JM, Pupko T. Rubinstein ND, et al. Among authors: gershoni jm. Mol Immunol. 2008 Jul;45(12):3477-89. doi: 10.1016/j.molimm.2007.10.016. Epub 2007 Nov 26. Mol Immunol. 2008. PMID: 18023478
Pepitope: epitope mapping from affinity-selected peptides.
Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund NT, Bublil EM, Ruppin E, Sharan R, Gershoni JM, Martz E, Pupko T. Mayrose I, et al. Among authors: gershoni jm. Bioinformatics. 2007 Dec 1;23(23):3244-6. doi: 10.1093/bioinformatics/btm493. Epub 2007 Oct 31. Bioinformatics. 2007. PMID: 17977889 Free PMC article.
Functional reconstitution of the MERS CoV receptor binding motif.
Uppalapati L, Roitburd-Berman A, Weiss-Ottolenghi Y, Graham BS, Dimitrov DS, Ying T, Failayev H, Tsfadia Y, Gershoni JM. Uppalapati L, et al. Among authors: gershoni jm. Mol Immunol. 2022 May;145:3-16. doi: 10.1016/j.molimm.2022.03.006. Epub 2022 Mar 4. Mol Immunol. 2022. PMID: 35272105 Free PMC article.
99 results