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Choice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses.
Fernández-Pato A, Sinha T, Gacesa R, Andreu-Sánchez S, Gois MFB, Gelderloos-Arends J, Jansen DBH, Kruk M, Jaeger M, Joosten LAB, Netea MG, Weersma RK, Wijmenga C, Harmsen HJM, Fu J, Zhernakova A, Kurilshikov A. Fernández-Pato A, et al. Among authors: gelderloos arends j. Sci Rep. 2024 Feb 16;14(1):3911. doi: 10.1038/s41598-024-54353-w. Sci Rep. 2024. PMID: 38366085 Free PMC article.
Antigen-driven colonic inflammation is associated with development of dysplasia in primary sclerosing cholangitis.
Shaw DG, Aguirre-Gamboa R, Vieira MC, Gona S, DiNardi N, Wang A, Dumaine A, Gelderloos-Arends J, Earley ZM, Meckel KR, Ciszewski C, Castillo A, Monroe K, Torres J, Shah SC, Colombel JF, Itzkowitz S, Newberry R, Cohen RD, Rubin DT, Quince C, Cobey S, Jonkers IH, Weber CR, Pekow J, Wilson PC, Barreiro LB, Jabri B. Shaw DG, et al. Among authors: gelderloos arends j. Nat Med. 2023 Jun;29(6):1520-1529. doi: 10.1038/s41591-023-02372-x. Epub 2023 Jun 15. Nat Med. 2023. PMID: 37322120 Free PMC article.
Environmental factors shaping the gut microbiome in a Dutch population.
Gacesa R, Kurilshikov A, Vich Vila A, Sinha T, Klaassen MAY, Bolte LA, Andreu-Sánchez S, Chen L, Collij V, Hu S, Dekens JAM, Lenters VC, Björk JR, Swarte JC, Swertz MA, Jansen BH, Gelderloos-Arends J, Jankipersadsing S, Hofker M, Vermeulen RCH, Sanna S, Harmsen HJM, Wijmenga C, Fu J, Zhernakova A, Weersma RK. Gacesa R, et al. Among authors: gelderloos arends j. Nature. 2022 Apr;604(7907):732-739. doi: 10.1038/s41586-022-04567-7. Epub 2022 Apr 13. Nature. 2022. PMID: 35418674