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Page 1
Evaluating the Reliability of Human Brain White Matter Tractometry.
Kruper J, Yeatman JD, Richie-Halford A, Bloom D, Grotheer M, Caffarra S, Kiar G, Karipidis II, Roy E, Chandio BQ, Garyfallidis E, Rokem A. Kruper J, et al. Among authors: garyfallidis e. Apert Neuro. 2021;1(1):10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669. doi: 10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669. Epub 2021 Nov 17. Apert Neuro. 2021. PMID: 35079748 Free PMC article.
Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project.
Henriques RN, Correia MM, Marrale M, Huber E, Kruper J, Koudoro S, Yeatman JD, Garyfallidis E, Rokem A. Henriques RN, et al. Among authors: garyfallidis e. Front Hum Neurosci. 2021 Jul 19;15:675433. doi: 10.3389/fnhum.2021.675433. eCollection 2021. Front Hum Neurosci. 2021. PMID: 34349631 Free PMC article.
QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data.
Cieslak M, Cook PA, He X, Yeh FC, Dhollander T, Adebimpe A, Aguirre GK, Bassett DS, Betzel RF, Bourque J, Cabral LM, Davatzikos C, Detre JA, Earl E, Elliott MA, Fadnavis S, Fair DA, Foran W, Fotiadis P, Garyfallidis E, Giesbrecht B, Gur RC, Gur RE, Kelz MB, Keshavan A, Larsen BS, Luna B, Mackey AP, Milham MP, Oathes DJ, Perrone A, Pines AR, Roalf DR, Richie-Halford A, Rokem A, Sydnor VJ, Tapera TM, Tooley UA, Vettel JM, Yeatman JD, Grafton ST, Satterthwaite TD. Cieslak M, et al. Among authors: garyfallidis e. Nat Methods. 2021 Jul;18(7):775-778. doi: 10.1038/s41592-021-01185-5. Epub 2021 Jun 21. Nat Methods. 2021. PMID: 34155395 Free PMC article.
Learning white matter subject-specific segmentation from structural MRI.
Yang Q, Hansen CB, Cai LY, Rheault F, Lee HH, Bao S, Chandio BQ, Williams O, Resnick SM, Garyfallidis E, Anderson AW, Descoteaux M, Schilling KG, Landman BA. Yang Q, et al. Among authors: garyfallidis e. Med Phys. 2022 Apr;49(4):2502-2513. doi: 10.1002/mp.15495. Epub 2022 Feb 7. Med Phys. 2022. PMID: 35090192 Free PMC article.
Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography.
Hansen CB, Yang Q, Lyu I, Rheault F, Kerley C, Chandio BQ, Fadnavis S, Williams O, Shafer AT, Resnick SM, Zald DH, Cutting LE, Taylor WD, Boyd B, Garyfallidis E, Anderson AW, Descoteaux M, Landman BA, Schilling KG. Hansen CB, et al. Among authors: garyfallidis e. Neuroinformatics. 2021 Jul;19(3):447-460. doi: 10.1007/s12021-020-09497-1. Epub 2020 Nov 16. Neuroinformatics. 2021. PMID: 33196967 Free PMC article.
Bifurcated Topological Optimization for IVIM.
Fadnavis S, Endres S, Wen Q, Wu YC, Cheng H, Koudoro S, Rane S, Rokem A, Garyfallidis E. Fadnavis S, et al. Among authors: garyfallidis e. Front Neurosci. 2021 Dec 15;15:779025. doi: 10.3389/fnins.2021.779025. eCollection 2021. Front Neurosci. 2021. PMID: 34975382 Free PMC article.
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience.
Gau R, Noble S, Heuer K, Bottenhorn KL, Bilgin IP, Yang YF, Huntenburg JM, Bayer JMM, Bethlehem RAI, Rhoads SA, Vogelbacher C, Borghesani V, Levitis E, Wang HT, Van Den Bossche S, Kobeleva X, Legarreta JH, Guay S, Atay SM, Varoquaux GP, Huijser DC, Sandström MS, Herholz P, Nastase SA, Badhwar A, Dumas G, Schwab S, Moia S, Dayan M, Bassil Y, Brooks PP, Mancini M, Shine JM, O'Connor D, Xie X, Poggiali D, Friedrich P, Heinsfeld AS, Riedl L, Toro R, Caballero-Gaudes C, Eklund A, Garner KG, Nolan CR, Demeter DV, Barrios FA, Merchant JS, McDevitt EA, Oostenveld R, Craddock RC, Rokem A, Doyle A, Ghosh SS, Nikolaidis A, Stanley OW, Uruñuela E; Brainhack Community. Gau R, et al. Neuron. 2021 Jun 2;109(11):1769-1775. doi: 10.1016/j.neuron.2021.04.001. Epub 2021 Apr 30. Neuron. 2021. PMID: 33932337 Free PMC article.
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?
Schilling KG, Rheault F, Petit L, Hansen CB, Nath V, Yeh FC, Girard G, Barakovic M, Rafael-Patino J, Yu T, Fischi-Gomez E, Pizzolato M, Ocampo-Pineda M, Schiavi S, Canales-Rodríguez EJ, Daducci A, Granziera C, Innocenti G, Thiran JP, Mancini L, Wastling S, Cocozza S, Petracca M, Pontillo G, Mancini M, Vos SB, Vakharia VN, Duncan JS, Melero H, Manzanedo L, Sanz-Morales E, Peña-Melián Á, Calamante F, Attyé A, Cabeen RP, Korobova L, Toga AW, Vijayakumari AA, Parker D, Verma R, Radwan A, Sunaert S, Emsell L, De Luca A, Leemans A, Bajada CJ, Haroon H, Azadbakht H, Chamberland M, Genc S, Tax CMW, Yeh PH, Srikanchana R, Mcknight CD, Yang JY, Chen J, Kelly CE, Yeh CH, Cochereau J, Maller JJ, Welton T, Almairac F, Seunarine KK, Clark CA, Zhang F, Makris N, Golby A, Rathi Y, O'Donnell LJ, Xia Y, Aydogan DB, Shi Y, Fernandes FG, Raemaekers M, Warrington S, Michielse S, Ramírez-Manzanares A, Concha L, Aranda R, Meraz MR, Lerma-Usabiaga G, Roitman L, Fekonja LS, Calarco N, Joseph M, Nakua H, Voineskos AN, Karan P, Grenier G, Legarreta JH, Adluru N, Nair VA, Prabhakaran V, Alexander AL, Kamagata K, Saito Y, Uchida W, Andica C, Abe M, Bayrak RG, Wheeler-Kingshott CAMG, D'Angelo E, Palesi F, Savi… See abstract for full author list ➔ Schilling KG, et al. Among authors: garyfallidis e. Neuroimage. 2021 Nov;243:118502. doi: 10.1016/j.neuroimage.2021.118502. Epub 2021 Aug 22. Neuroimage. 2021. PMID: 34433094 Free PMC article.
Dipy, a library for the analysis of diffusion MRI data.
Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I; Dipy Contributors. Garyfallidis E, et al. Front Neuroinform. 2014 Feb 21;8:8. doi: 10.3389/fninf.2014.00008. eCollection 2014. Front Neuroinform. 2014. PMID: 24600385 Free PMC article.
40 results