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Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains.
Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. Zwick RK, et al. Among authors: gartner zj. Nat Cell Biol. 2024 Feb;26(2):250-262. doi: 10.1038/s41556-023-01337-z. Epub 2024 Feb 6. Nat Cell Biol. 2024. PMID: 38321203
Loss of PPARγ activity characterizes early protumorigenic stromal reprogramming and dictates the therapeutic window of opportunity.
Caruso JA, Wang X, Murrow LM, Rodriguez CI, Chen-Tanyolac C, Vu L, Chen YY, Gascard P, Gartner ZJ, Kerlikowske K, Tlsty TD. Caruso JA, et al. Among authors: gartner zj. Proc Natl Acad Sci U S A. 2023 Oct 17;120(42):e2303774120. doi: 10.1073/pnas.2303774120. Epub 2023 Oct 10. Proc Natl Acad Sci U S A. 2023. PMID: 37816052 Free PMC article.
Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains.
Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. Zwick RK, et al. Among authors: gartner zj. bioRxiv [Preprint]. 2023 Sep 22:2023.09.20.558726. doi: 10.1101/2023.09.20.558726. bioRxiv. 2023. PMID: 37790430 Free PMC article. Updated. Preprint.
Configurational entropy is an intrinsic driver of tissue structural heterogeneity.
Srivastava V, Hu JL, Garbe JC, Veytsman B, Shalabi SF, Yllanes D, Thomson M, LaBarge MA, Huber G, Gartner ZJ. Srivastava V, et al. Among authors: gartner zj. bioRxiv [Preprint]. 2023 Jul 2:2023.07.01.546933. doi: 10.1101/2023.07.01.546933. bioRxiv. 2023. PMID: 37425903 Free PMC article. Preprint.
Patterning and folding of intestinal villi by active mesenchymal dewetting.
Huycke TR, Miyazaki H, Häkkinen TJ, Srivastava V, Barruet E, McGinnis CS, Kalantari A, Cornwall-Scoones J, Vaka D, Zhu Q, Jo H, DeGrado WF, Thomson M, Garikipati K, Boffelli D, Klein OD, Gartner ZJ. Huycke TR, et al. Among authors: gartner zj. bioRxiv [Preprint]. 2023 Aug 15:2023.06.25.546328. doi: 10.1101/2023.06.25.546328. bioRxiv. 2023. PMID: 37425793 Free PMC article. Preprint.
D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response.
Jiang J, Chen S, Tsou T, McGinnis CS, Khazaei T, Zhu Q, Park JH, Strazhnik IM, Hanna J, Chow ED, Sivak DA, Gartner ZJ, Thomson M. Jiang J, et al. Among authors: gartner zj. bioRxiv [Preprint]. 2023 May 20:2023.04.19.537364. doi: 10.1101/2023.04.19.537364. bioRxiv. 2023. PMID: 37131803 Free PMC article. Preprint.
deMULTIplex2: robust sample demultiplexing for scRNA-seq.
Zhu Q, Conrad DN, Gartner ZJ. Zhu Q, et al. Among authors: gartner zj. bioRxiv [Preprint]. 2023 Apr 12:2023.04.11.536275. doi: 10.1101/2023.04.11.536275. bioRxiv. 2023. PMID: 37090649 Free PMC article. Updated. Preprint.
88 results