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Short impact on soil microbiome of a Bacillus amyloliquefaciens QST713 based product that correlates with higher potato yield across USA.
Adamo I, Acin-Albiac M, Röttjers S, de Prado DR, Benito BM, Zamora J, Godara R, García-Jiménez B, Jiang-Rempel P, Cline LC, Acedo A. Adamo I, et al. Among authors: garcia jimenez b. Front Plant Sci. 2024 Mar 12;15:1332840. doi: 10.3389/fpls.2024.1332840. eCollection 2024. Front Plant Sci. 2024. PMID: 38545390 Free PMC article.
Physicochemical Properties and Microbiome of Vineyard Soils from DOP Ribeiro (NW Spain) Are Influenced by Agricultural Management.
Blanco P, Rodríguez I, Fernández-Fernández V, Ramil M, Castrillo D, Acín-Albiac M, Adamo I, Fernández-Trujillo C, García-Jiménez B, Acedo A, Calvo-Portela N, Parente-Sendín A, Acemel-Míguez L, Alonso-Vega F. Blanco P, et al. Among authors: garcia jimenez b. Microorganisms. 2024 Mar 16;12(3):595. doi: 10.3390/microorganisms12030595. Microorganisms. 2024. PMID: 38543648 Free PMC article.
Testing the stress gradient hypothesis in soil bacterial communities associated with vegetation belts in the Andean Atacama Desert.
Mandakovic D, Aguado-Norese C, García-Jiménez B, Hodar C, Maldonado JE, Gaete A, Latorre M, Wilkinson MD, Gutiérrez RA, Cavieres LA, Medina J, Cambiazo V, Gonzalez M. Mandakovic D, et al. Among authors: garcia jimenez b. Environ Microbiome. 2023 Mar 28;18(1):24. doi: 10.1186/s40793-023-00486-w. Environ Microbiome. 2023. PMID: 36978149 Free PMC article.
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling.
Ankrah NYD, Bernstein DB, Biggs M, Carey M, Engevik M, García-Jiménez B, Lakshmanan M, Pacheco AR, Sulheim S, Medlock GL. Ankrah NYD, et al. Among authors: garcia jimenez b. mSystems. 2021 Dec 21;6(6):e0059921. doi: 10.1128/mSystems.00599-21. Epub 2021 Dec 14. mSystems. 2021. PMID: 34904863 Free PMC article.
Predicting microbiomes through a deep latent space.
García-Jiménez B, Muñoz J, Cabello S, Medina J, Wilkinson MD. García-Jiménez B, et al. Bioinformatics. 2021 Jun 16;37(10):1444-1451. doi: 10.1093/bioinformatics/btaa971. Bioinformatics. 2021. PMID: 33289510 Free PMC article.
Data-driven classification of the certainty of scholarly assertions.
Prieto M, Deus H, de Waard A, Schultes E, García-Jiménez B, Wilkinson MD. Prieto M, et al. Among authors: garcia jimenez b. PeerJ. 2020 Apr 21;8:e8871. doi: 10.7717/peerj.8871. eCollection 2020. PeerJ. 2020. PMID: 32341891 Free PMC article.
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Sheriff RSM, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: garcia jimenez b. Nat Biotechnol. 2020 Apr;38(4):504. doi: 10.1038/s41587-020-0477-4. Nat Biotechnol. 2020. PMID: 32265554 Free PMC article.
MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: garcia jimenez b. Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. Nat Biotechnol. 2020. PMID: 32123384 Free PMC article. No abstract available.
17 results