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Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3.
Beghini F, McIver LJ, Blanco-Míguez A, Dubois L, Asnicar F, Maharjan S, Mailyan A, Manghi P, Scholz M, Thomas AM, Valles-Colomer M, Weingart G, Zhang Y, Zolfo M, Huttenhower C, Franzosa EA, Segata N. Beghini F, et al. Among authors: franzosa ea. Elife. 2021 May 4;10:e65088. doi: 10.7554/eLife.65088. Elife. 2021. PMID: 33944776 Free PMC article.
Relating the metatranscriptome and metagenome of the human gut.
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C. Franzosa EA, et al. Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2329-38. doi: 10.1073/pnas.1319284111. Epub 2014 May 19. Proc Natl Acad Sci U S A. 2014. PMID: 24843156 Free PMC article.
Advancing the microbiome research community.
Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J; Scientists for Advancement of Microbiome Research; White O. Huttenhower C, et al. Among authors: franzosa ea. Cell. 2014 Oct 9;159(2):227-30. doi: 10.1016/j.cell.2014.09.022. Cell. 2014. PMID: 25303518 Free PMC article.
Identifying personal microbiomes using metagenomic codes.
Franzosa EA, Huang K, Meadow JF, Gevers D, Lemon KP, Bohannan BJ, Huttenhower C. Franzosa EA, et al. Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):E2930-8. doi: 10.1073/pnas.1423854112. Epub 2015 May 11. Proc Natl Acad Sci U S A. 2015. PMID: 25964341 Free PMC article.
MetaPhlAn2 for enhanced metagenomic taxonomic profiling.
Truong DT, Franzosa EA, Tickle TL, Scholz M, Weingart G, Pasolli E, Tett A, Huttenhower C, Segata N. Truong DT, et al. Among authors: franzosa ea. Nat Methods. 2015 Oct;12(10):902-3. doi: 10.1038/nmeth.3589. Nat Methods. 2015. PMID: 26418763 No abstract available.
Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes.
Yassour M, Lim MY, Yun HS, Tickle TL, Sung J, Song YM, Lee K, Franzosa EA, Morgan XC, Gevers D, Lander ES, Xavier RJ, Birren BW, Ko G, Huttenhower C. Yassour M, et al. Among authors: franzosa ea. Genome Med. 2016 Feb 17;8(1):17. doi: 10.1186/s13073-016-0271-6. Genome Med. 2016. PMID: 26884067 Free PMC article.
83 results