Fischer DS - Search Results

1

Cell-Type-Specific Impact of Glucocorticoid Receptor Activation on the Developing Brain: A Cerebral Organoid Study.

Cruceanu C, Dony L, Krontira AC, Fischer DS, Roeh S, Di Giaimo R, Kyrousi C, Kaspar L, Arloth J, Czamara D, Gerstner N, Martinelli S, Wehner S, Breen MS, Koedel M, Sauer S, Sportelli V, Rex-Haffner M, Cappello S, Theis FJ, Binder EB. Cruceanu C, et al. Among authors: fischer ds. Am J Psychiatry. 2022 May;179(5):375-387. doi: 10.1176/appi.ajp.2021.21010095. Epub 2021 Oct 26. Am J Psychiatry. 2022. PMID: 34698522

2

Impulse model-based differential expression analysis of time course sequencing data.

Fischer DS, Theis FJ, Yosef N. Fischer DS, et al. Nucleic Acids Res. 2018 Nov 16;46(20):e119. doi: 10.1093/nar/gky675. Nucleic Acids Res. 2018. PMID: 30102402 Free PMC article.

3

Inferring population dynamics from single-cell RNA-sequencing time series data.

Fischer DS, Fiedler AK, Kernfeld EM, Genga RMJ, Bastidas-Ponce A, Bakhti M, Lickert H, Hasenauer J, Maehr R, Theis FJ. Fischer DS, et al. Nat Biotechnol. 2019 Apr;37(4):461-468. doi: 10.1038/s41587-019-0088-0. Epub 2019 Apr 1. Nat Biotechnol. 2019. PMID: 30936567 Free PMC article.

4

Concepts and limitations for learning developmental trajectories from single cell genomics.

Tritschler S, Büttner M, Fischer DS, Lange M, Bergen V, Lickert H, Theis FJ. Tritschler S, et al. Among authors: fischer ds. Development. 2019 Jun 27;146(12):dev170506. doi: 10.1242/dev.170506. Development. 2019. PMID: 31249007 Review.

5

MPRAnalyze: statistical framework for massively parallel reporter assays.

Ashuach T, Fischer DS, Kreimer A, Ahituv N, Theis FJ, Yosef N. Ashuach T, et al. Among authors: fischer ds. Genome Biol. 2019 Sep 2;20(1):183. doi: 10.1186/s13059-019-1787-z. Genome Biol. 2019. PMID: 31477158 Free PMC article.

6

Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data.

Angerer P, Fischer DS, Theis FJ, Scialdone A, Marr C. Angerer P, et al. Among authors: fischer ds. Bioinformatics. 2020 Aug 1;36(15):4291-4295. doi: 10.1093/bioinformatics/btaa198. Bioinformatics. 2020. PMID: 32207520 Free PMC article.

7

Predicting antigen specificity of single T cells based on TCR CDR3 regions.

Fischer DS, Wu Y, Schubert B, Theis FJ. Fischer DS, et al. Mol Syst Biol. 2020 Aug;16(8):e9416. doi: 10.15252/msb.20199416. Mol Syst Biol. 2020. PMID: 32779888 Free PMC article.

8

Sfaira accelerates data and model reuse in single cell genomics.

Fischer DS, Dony L, König M, Moeed A, Zappia L, Heumos L, Tritschler S, Holmberg O, Aliee H, Theis FJ. Fischer DS, et al. Genome Biol. 2021 Aug 25;22(1):248. doi: 10.1186/s13059-021-02452-6. Genome Biol. 2021. PMID: 34433466 Free PMC article.

9

EpiScanpy: integrated single-cell epigenomic analysis.

Danese A, Richter ML, Chaichoompu K, Fischer DS, Theis FJ, Colomé-Tatché M. Danese A, et al. Among authors: fischer ds. Nat Commun. 2021 Sep 1;12(1):5228. doi: 10.1038/s41467-021-25131-3. Nat Commun. 2021. PMID: 34471111 Free PMC article.

10

Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies.

Verdun CM, Fuchs T, Harar P, Elbrächter D, Fischer DS, Berner J, Grohs P, Theis FJ, Krahmer F. Verdun CM, et al. Among authors: fischer ds. Front Public Health. 2021 Aug 18;9:583377. doi: 10.3389/fpubh.2021.583377. eCollection 2021. Front Public Health. 2021. PMID: 34490172 Free PMC article.

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