Fidelis K - Search Results

1

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts.

Björkholm P, Daniluk P, Kryshtafovych A, Fidelis K, Andersson R, Hvidsten TR. Björkholm P, et al. Among authors: fidelis k. Bioinformatics. 2009 May 15;25(10):1264-70. doi: 10.1093/bioinformatics/btp149. Epub 2009 Mar 16. Bioinformatics. 2009. PMID: 19289446 Free PMC article.

2

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins.

Hvidsten TR, Kryshtafovych A, Komorowski J, Fidelis K. Hvidsten TR, et al. Among authors: fidelis k. Bioinformatics. 2003 Oct;19 Suppl 2:ii81-91. doi: 10.1093/bioinformatics/btg1064. Bioinformatics. 2003. PMID: 14534176

3

Discovering regulatory binding-site modules using rule-based learning.

Hvidsten TR, Wilczyński B, Kryshtafovych A, Tiuryn J, Komorowski J, Fidelis K. Hvidsten TR, et al. Among authors: fidelis k. Genome Res. 2005 Jun;15(6):856-66. doi: 10.1101/gr.3760605. Genome Res. 2005. PMID: 15930496 Free PMC article.

4

CASP6 data processing and automatic evaluation at the protein structure prediction center.

Kryshtafovych A, Milostan M, Szajkowski L, Daniluk P, Fidelis K. Kryshtafovych A, et al. Among authors: fidelis k. Proteins. 2005;61 Suppl 7:19-23. doi: 10.1002/prot.20718. Proteins. 2005. PMID: 16187343

5

System for accepting server predictions in CASP6.

Eyrich VA, Kryshtafovych A, Milostan M, Fidelis K. Eyrich VA, et al. Among authors: fidelis k. Proteins. 2005;61 Suppl 7:24-26. doi: 10.1002/prot.20719. Proteins. 2005. PMID: 16187344

6

Progress over the first decade of CASP experiments.

Kryshtafovych A, Venclovas Č, Fidelis K, Moult J. Kryshtafovych A, et al. Among authors: fidelis k. Proteins. 2005;61 Suppl 7:225-236. doi: 10.1002/prot.20740. Proteins. 2005. PMID: 16187365

7

Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures.

Strömbergsson H, Kryshtafovych A, Prusis P, Fidelis K, Wikberg JE, Komorowski J, Hvidsten TR. Strömbergsson H, et al. Among authors: fidelis k. Proteins. 2006 Nov 15;65(3):568-79. doi: 10.1002/prot.21163. Proteins. 2006. PMID: 16948162

8

Using local gene expression similarities to discover regulatory binding site modules.

Wilczyński B, Hvidsten TR, Kryshtafovych A, Tiuryn J, Komorowski J, Fidelis K. Wilczyński B, et al. Among authors: fidelis k. BMC Bioinformatics. 2006 Nov 17;7:505. doi: 10.1186/1471-2105-7-505. BMC Bioinformatics. 2006. PMID: 17109764 Free PMC article.

9

New tools and expanded data analysis capabilities at the Protein Structure Prediction Center.

Kryshtafovych A, Prlic A, Dmytriv Z, Daniluk P, Milostan M, Eyrich V, Hubbard T, Fidelis K. Kryshtafovych A, et al. Among authors: fidelis k. Proteins. 2007;69 Suppl 8(S8):19-26. doi: 10.1002/prot.21653. Proteins. 2007. PMID: 17705273 Free PMC article.

10

Progress from CASP6 to CASP7.

Kryshtafovych A, Fidelis K, Moult J. Kryshtafovych A, et al. Among authors: fidelis k. Proteins. 2007;69 Suppl 8:194-207. doi: 10.1002/prot.21769. Proteins. 2007. PMID: 17918728

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