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Bioactivity Profile Similarities to Expand the Repertoire of COVID-19 Drugs.
J Chem Inf Model. 2020 Dec 28;60(12):5730-5734. doi: 10.1021/acs.jcim.0c00420. Epub 2020 Jul 16.
J Chem Inf Model. 2020.
PMID: 32672454
Encircling the regions of the pharmacogenomic landscape that determine drug response.
Fernández-Torras A, Duran-Frigola M, Aloy P.
Fernández-Torras A, et al.
Genome Med. 2019 Mar 26;11(1):17. doi: 10.1186/s13073-019-0626-x.
Genome Med. 2019.
PMID: 30914058
Free PMC article.
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Connecting chemistry and biology through molecular descriptors.
Fernández-Torras A, Comajuncosa-Creus A, Duran-Frigola M, Aloy P.
Fernández-Torras A, et al.
Curr Opin Chem Biol. 2022 Feb;66:102090. doi: 10.1016/j.cbpa.2021.09.001. Epub 2021 Oct 6.
Curr Opin Chem Biol. 2022.
PMID: 34626922
Review.
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A community challenge for a pancancer drug mechanism of action inference from perturbational profile data.
Douglass EF Jr, Allaway RJ, Szalai B, Wang W, Tian T, Fernández-Torras A, Realubit R, Karan C, Zheng S, Pessia A, Tanoli Z, Jafari M, Wan F, Li S, Xiong Y, Duran-Frigola M, Bertoni M, Badia-I-Mompel P, Mateo L, Guitart-Pla O, Chung V; DREAM CTD-squared Pancancer Drug Activity Challenge Consortium; Tang J, Zeng J, Aloy P, Saez-Rodriguez J, Guinney J, Gerhard DS, Califano A.
Douglass EF Jr, et al. Among authors: fernandez torras a.
Cell Rep Med. 2022 Jan 18;3(1):100492. doi: 10.1016/j.xcrm.2021.100492. eCollection 2022 Jan 18.
Cell Rep Med. 2022.
PMID: 35106508
Free PMC article.
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Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque.
Fernández-Torras A, Duran-Frigola M, Bertoni M, Locatelli M, Aloy P.
Fernández-Torras A, et al.
Nat Commun. 2022 Sep 9;13(1):5304. doi: 10.1038/s41467-022-33026-0.
Nat Commun. 2022.
PMID: 36085310
Free PMC article.
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Characterization of p38α Signaling Networks in Cancer Cells Using Quantitative Proteomics and Phosphoproteomics.
Dan Y, Radic N, Gay M, Fernández-Torras A, Arauz G, Vilaseca M, Aloy P, Canovas B, Nebreda AR.
Dan Y, et al. Among authors: fernandez torras a.
Mol Cell Proteomics. 2023 Apr;22(4):100527. doi: 10.1016/j.mcpro.2023.100527. Epub 2023 Mar 7.
Mol Cell Proteomics. 2023.
PMID: 36894123
Free PMC article.
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Democratizing knowledge representation with BioCypher.
Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey VJ, Charoentong P, Danhauser K, Doğan T, Dreo J, Dunham I, Farr E, Fernandez-Torras A, Gyori BM, Hartung M, Hoyt CT, Klein C, Korcsmaros T, Maier A, Mann M, Ochoa D, Pareja-Lorente E, Popp F, Preusse M, Probul N, Schwikowski B, Sen B, Strauss MT, Turei D, Ulusoy E, Waltemath D, Wodke JAH, Saez-Rodriguez J.
Lobentanzer S, et al. Among authors: fernandez torras a.
Nat Biotechnol. 2023 Aug;41(8):1056-1059. doi: 10.1038/s41587-023-01848-y.
Nat Biotechnol. 2023.
PMID: 37337100
No abstract available.
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BQsupports: systematic assessment of the support and novelty of new biomedical associations.
Fernández-Torras A, Locatelli M, Bertoni M, Aloy P.
Fernández-Torras A, et al.
Bioinformatics. 2023 Sep 2;39(9):btad581. doi: 10.1093/bioinformatics/btad581.
Bioinformatics. 2023.
PMID: 37725353
Free PMC article.
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