Erman B - Search Results

1

Predicting most probable conformations of a given peptide sequence in the random coil state.

Bayrak CS, Erman B. Bayrak CS, et al. Among authors: erman b. Mol Biosyst. 2012 Nov;8(11):3010-6. doi: 10.1039/c2mb25181g. Epub 2012 Sep 6. Mol Biosyst. 2012. PMID: 22955874

2

Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins.

Ormeci L, Gursoy A, Tunca G, Erman B. Ormeci L, et al. Among authors: erman b. Proteins. 2007 Jan 1;66(1):29-40. doi: 10.1002/prot.21206. Proteins. 2007. PMID: 17039547

3

Quantum mechanical calculations of tryptophan and comparison with conformations in native proteins.

Yurtsever E, Yuret D, Erman B. Yurtsever E, et al. Among authors: erman b. J Phys Chem A. 2006 Dec 28;110(51):13933-8. doi: 10.1021/jp062921n. J Phys Chem A. 2006. PMID: 17181353

4

Optimum folding pathways for growing protein chains.

Senturk S, Baday S, Arkun Y, Erman B. Senturk S, et al. Among authors: erman b. Phys Biol. 2007 Nov 26;4(4):305-16. doi: 10.1088/1478-3975/4/4/007. Phys Biol. 2007. PMID: 18185008

5

The introduction of hydrogen bond and hydrophobicity effects into the rotational isomeric states model for conformational analysis of unfolded peptides.

Engin O, Sayar M, Erman B. Engin O, et al. Among authors: erman b. Phys Biol. 2009 Jan 13;6(1):016001. doi: 10.1088/1478-3975/6/1/016001. Phys Biol. 2009. PMID: 19141876

6

Conformational energies and entropies of peptides, and the peptide-protein binding problem.

Unal EB, Gursoy A, Erman B. Unal EB, et al. Among authors: erman b. Phys Biol. 2009 Jun 23;6(3):036014. doi: 10.1088/1478-3975/6/3/036014. Phys Biol. 2009. PMID: 19549999

7

VitAL: Viterbi algorithm for de novo peptide design.

Unal EB, Gursoy A, Erman B. Unal EB, et al. Among authors: erman b. PLoS One. 2010 Jun 2;5(6):e10926. doi: 10.1371/journal.pone.0010926. PLoS One. 2010. PMID: 20532195 Free PMC article.

8

Conformational transitions in the Ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model.

Bayrak CS, Erman B. Bayrak CS, et al. Among authors: erman b. Mol Biosyst. 2014 Mar 4;10(3):663-71. doi: 10.1039/c3mb70433e. Epub 2014 Jan 17. Mol Biosyst. 2014. PMID: 24442235

9

Relationships between amino acid sequence and backbone torsion angle preferences.

Keskin O, Yuret D, Gursoy A, Turkay M, Erman B. Keskin O, et al. Among authors: erman b. Proteins. 2004 Jun 1;55(4):992-8. doi: 10.1002/prot.20100. Proteins. 2004. PMID: 15146495

10

Folding dynamics of proteins from denatured to native state: principal component analysis.

Palazoglu A, Gursoy A, Arkun Y, Erman B. Palazoglu A, et al. Among authors: erman b. J Comput Biol. 2004;11(6):1149-68. doi: 10.1089/cmb.2004.11.1149. J Comput Biol. 2004. PMID: 15662203

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