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The plant ionome revisited by the nutrient balance concept.
Parent SÉ, Parent LE, Egozcue JJ, Rozane DE, Hernandes A, Lapointe L, Hébert-Gentile V, Naess K, Marchand S, Lafond J, Mattos D Jr, Barlow P, Natale W. Parent SÉ, et al. Among authors: egozcue jj. Front Plant Sci. 2013 Mar 22;4:39. doi: 10.3389/fpls.2013.00039. eCollection 2013. Front Plant Sci. 2013. PMID: 23526060 Free PMC article.
Microbiome Datasets Are Compositional: And This Is Not Optional.
Gloor GB, Macklaim JM, Pawlowsky-Glahn V, Egozcue JJ. Gloor GB, et al. Among authors: egozcue jj. Front Microbiol. 2017 Nov 15;8:2224. doi: 10.3389/fmicb.2017.02224. eCollection 2017. Front Microbiol. 2017. PMID: 29187837 Free PMC article. Review.
Balances: a New Perspective for Microbiome Analysis.
Rivera-Pinto J, Egozcue JJ, Pawlowsky-Glahn V, Paredes R, Noguera-Julian M, Calle ML. Rivera-Pinto J, et al. Among authors: egozcue jj. mSystems. 2018 Jul 17;3(4):e00053-18. doi: 10.1128/mSystems.00053-18. eCollection 2018 Jul-Aug. mSystems. 2018. PMID: 30035234 Free PMC article.
It's all relative: analyzing microbiome data as compositions.
Gloor GB, Wu JR, Pawlowsky-Glahn V, Egozcue JJ. Gloor GB, et al. Among authors: egozcue jj. Ann Epidemiol. 2016 May;26(5):322-9. doi: 10.1016/j.annepidem.2016.03.003. Epub 2016 Apr 2. Ann Epidemiol. 2016. PMID: 27143475 Review.
Exploration of geochemical data with compositional canonical biplots.
Graffelman J, Pawlowsky-Glahn V, Egozcue JJ, Buccianti A. Graffelman J, et al. Among authors: egozcue jj. J Geochem Explor. 2018 Nov;194:120-133. doi: 10.1016/j.gexplo.2018.07.014. Epub 2018 Jul 25. J Geochem Explor. 2018. PMID: 33510550 Free PMC article.
Long-term impact of fecal transplantation in healthy volunteers.
Goloshchapov OV, Olekhnovich EI, Sidorenko SV, Moiseev IS, Kucher MA, Fedorov DE, Pavlenko AV, Manolov AI, Gostev VV, Veselovsky VA, Klimina KM, Kostryukova ES, Bakin EA, Shvetcov AN, Gumbatova ED, Klementeva RV, Shcherbakov AA, Gorchakova MV, Egozcue JJ, Pawlowsky-Glahn V, Suvorova MA, Chukhlovin AB, Govorun VM, Ilina EN, Afanasyev BV. Goloshchapov OV, et al. Among authors: egozcue jj. BMC Microbiol. 2019 Dec 30;19(1):312. doi: 10.1186/s12866-019-1689-y. BMC Microbiol. 2019. PMID: 31888470 Free PMC article.
Some thoughts on counts in sequencing studies.
Egozcue JJ, Graffelman J, Ortego MI, Pawlowsky-Glahn V. Egozcue JJ, et al. NAR Genom Bioinform. 2020 Nov 20;2(4):lqaa094. doi: 10.1093/nargab/lqaa094. eCollection 2020 Dec. NAR Genom Bioinform. 2020. PMID: 33575638 Free PMC article.
Proportionality: a valid alternative to correlation for relative data.
Lovell D, Pawlowsky-Glahn V, Egozcue JJ, Marguerat S, Bähler J. Lovell D, et al. Among authors: egozcue jj. PLoS Comput Biol. 2015 Mar 16;11(3):e1004075. doi: 10.1371/journal.pcbi.1004075. eCollection 2015 Mar. PLoS Comput Biol. 2015. PMID: 25775355 Free PMC article.
15 results