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Page 1
The Promise and Pitfalls of Prophages.
McKerral JC, Papudeshi B, Inglis LK, Roach MJ, Decewicz P, McNair K, Luque A, Dinsdale EA, Edwards RA. McKerral JC, et al. Among authors: edwards ra. bioRxiv [Preprint]. 2023 Apr 21:2023.04.20.537752. doi: 10.1101/2023.04.20.537752. bioRxiv. 2023. PMID: 37131798 Free PMC article. Preprint.
Single-cell gene expression links SARS-CoV-2 infection and gut serotonin.
Martin AM, Roach M, Jones LA, Thorpe D, Coleman RA, Allman C, Edwards R, Keating DJ. Martin AM, et al. Among authors: edwards r. Gut. 2023 Jul;72(7):1430-1431. doi: 10.1136/gutjnl-2022-328262. Epub 2022 Aug 23. Gut. 2023. PMID: 35999041 Free PMC article. No abstract available.
Ten simple rules and a template for creating workflows-as-applications.
Roach MJ, Pierce-Ward NT, Suchecki R, Mallawaarachchi V, Papudeshi B, Handley SA, Brown CT, Watson-Haigh NS, Edwards RA. Roach MJ, et al. Among authors: edwards ra. PLoS Comput Biol. 2022 Dec 15;18(12):e1010705. doi: 10.1371/journal.pcbi.1010705. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36520686 Free PMC article. No abstract available.
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Mora MF, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: edwards ra. bioRxiv [Preprint]. 2023 Jul 26:2023.03.05.531146. doi: 10.1101/2023.03.05.531146. bioRxiv. 2023. PMID: 36945541 Free PMC article. Updated. Preprint.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: edwards ra. bioRxiv [Preprint]. 2023 Sep 11:2023.04.04.535632. doi: 10.1101/2023.04.04.535632. bioRxiv. 2023. PMID: 37066369 Free PMC article. Updated. Preprint.
Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome.
Doane MP, Reed MB, McKerral J, Farias Oliveira Lima L, Morris M, Goodman AZ, Johri S, Papudeshi B, Dillon T, Turnlund AC, Peterson M, Mora M, de la Parra Venegas R, Pillans R, Rohner CA, Pierce SJ, Legaspi CG, Araujo G, Ramirez-Macias D, Edwards RA, Dinsdale EA. Doane MP, et al. Among authors: edwards ra. Sci Rep. 2023 Aug 7;13(1):12747. doi: 10.1038/s41598-023-39184-5. Sci Rep. 2023. PMID: 37550406 Free PMC article.
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Fernanda Mora M, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: edwards ra. Microb Genom. 2023 Sep;9(9):001100. doi: 10.1099/mgen.0.001100. Microb Genom. 2023. PMID: 37665209 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: edwards ra. Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. Bioinformatics. 2023. PMID: 37738590 Free PMC article.
359 results