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Assembly and diploid architecture of an individual human genome via single-molecule technologies.
Pendleton M, Sebra R, Pang AW, Ummat A, Franzen O, Rausch T, Stütz AM, Stedman W, Anantharaman T, Hastie A, Dai H, Fritz MH, Cao H, Cohain A, Deikus G, Durrett RE, Blanchard SC, Altman R, Chin CS, Guo Y, Paxinos EE, Korbel JO, Darnell RB, McCombie WR, Kwok PY, Mason CE, Schadt EE, Bashir A. Pendleton M, et al. Among authors: durrett re. Nat Methods. 2015 Aug;12(8):780-6. doi: 10.1038/nmeth.3454. Epub 2015 Jun 29. Nat Methods. 2015. PMID: 26121404 Free PMC article.
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.
Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, Saghbini M, Kentsis A, Planet PJ, Kholodovych V, Tessler M, Baker R, DeSalle R, Sorkin LN, Kolokotronis SO, Siddall ME, Amato G, Mason CE. Rosenfeld JA, et al. Nat Commun. 2016 Feb 2;7:10164. doi: 10.1038/ncomms10164. Nat Commun. 2016. PMID: 26836631 Free PMC article.
Two methods for full-length RNA sequencing for low quantities of cells and single cells.
Pan X, Durrett RE, Zhu H, Tanaka Y, Li Y, Zi X, Marjani SL, Euskirchen G, Ma C, Lamotte RH, Park IH, Snyder MP, Mason CE, Weissman SM. Pan X, et al. Among authors: durrett re. Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):594-9. doi: 10.1073/pnas.1217322109. Epub 2012 Dec 24. Proc Natl Acad Sci U S A. 2013. PMID: 23267071 Free PMC article.
Multifunctional barcoding with ClonMapper enables high-resolution study of clonal dynamics during tumor evolution and treatment.
Gutierrez C, Al'Khafaji AM, Brenner E, Johnson KE, Gohil SH, Lin Z, Knisbacher BA, Durrett RE, Li S, Parvin S, Biran A, Zhang W, Rassenti L, Kipps TJ, Livak KJ, Neuberg D, Letai A, Getz G, Wu CJ, Brock A. Gutierrez C, et al. Among authors: durrett re. Nat Cancer. 2021 Jul;2(7):758-772. doi: 10.1038/s43018-021-00222-8. Epub 2021 Jul 12. Nat Cancer. 2021. PMID: 34939038 Free PMC article.
Determinants governing T cell receptor α/β-chain pairing in repertoire formation of identical twins.
Tanno H, Gould TM, McDaniel JR, Cao W, Tanno Y, Durrett RE, Park D, Cate SJ, Hildebrand WH, Dekker CL, Tian L, Weyand CM, Georgiou G, Goronzy JJ. Tanno H, et al. Among authors: durrett re. Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):532-540. doi: 10.1073/pnas.1915008117. Epub 2019 Dec 26. Proc Natl Acad Sci U S A. 2020. PMID: 31879353 Free PMC article.