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Two Years of Genomic Surveillance in Belgium during the SARS-CoV-2 Pandemic to Attain Country-Wide Coverage and Monitor the Introduction and Spread of Emerging Variants.
Cuypers L, Dellicour S, Hong SL, Potter BI, Verhasselt B, Vereecke N, Lambrechts L, Durkin K, Bours V, Klamer S, Bayon-Vicente G, Vael C, Ariën KK, De Mendonca R, Soetens O, Michel C, Bearzatto B, Naesens R, Gras J, Vankeerberghen A, Matheeussen V, Martens G, Obbels D, Lemmens A, Van den Poel B, Van Even E, De Rauw K, Waumans L, Reynders M, Degosserie J; COVID-19 Genomics Belgium Consortium; Maes P, André E, Baele G. Cuypers L, et al. Among authors: durkin k. Viruses. 2022 Oct 20;14(10):2301. doi: 10.3390/v14102301. Viruses. 2022. PMID: 36298856 Free PMC article. Review.
A Recurrent Mutation at Position 26340 of SARS-CoV-2 Is Associated with Failure of the E Gene Quantitative Reverse Transcription-PCR Utilized in a Commercial Dual-Target Diagnostic Assay.
Artesi M, Bontems S, Göbbels P, Franckh M, Maes P, Boreux R, Meex C, Melin P, Hayette MP, Bours V, Durkin K. Artesi M, et al. Among authors: durkin k. J Clin Microbiol. 2020 Sep 22;58(10):e01598-20. doi: 10.1128/JCM.01598-20. Print 2020 Sep 22. J Clin Microbiol. 2020. PMID: 32690547 Free PMC article.
A Phylodynamic Workflow to Rapidly Gain Insights into the Dispersal History and Dynamics of SARS-CoV-2 Lineages.
Dellicour S, Durkin K, Hong SL, Vanmechelen B, Martí-Carreras J, Gill MS, Meex C, Bontems S, André E, Gilbert M, Walker C, Maio N, Faria NR, Hadfield J, Hayette MP, Bours V, Wawina-Bokalanga T, Artesi M, Baele G, Maes P. Dellicour S, et al. Among authors: durkin k. Mol Biol Evol. 2021 Apr 13;38(4):1608-1613. doi: 10.1093/molbev/msaa284. Mol Biol Evol. 2021. PMID: 33316043 Free PMC article.
PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads.
Artesi M, Hahaut V, Cole B, Lambrechts L, Ashrafi F, Marçais A, Hermine O, Griebel P, Arsic N, van der Meer F, Burny A, Bron D, Bianchi E, Delvenne P, Bours V, Charlier C, Georges M, Vandekerckhove L, Van den Broeke A, Durkin K. Artesi M, et al. Among authors: durkin k. Genome Biol. 2021 Apr 6;22(1):97. doi: 10.1186/s13059-021-02307-0. Genome Biol. 2021. PMID: 33823910 Free PMC article.
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Genome Sequencing from Post-Mortem Formalin-Fixed, Paraffin-Embedded Lung Tissues.
Van Campenhout C, De Mendonça R, Alexiou B, De Clercq S, Racu ML, Royer-Chardon C, Rusu S, Van Eycken M, Artesi M, Durkin K, Mardulyn P, Bours V, Decaestecker C, Remmelink M, Salmon I, D'Haene N. Van Campenhout C, et al. Among authors: durkin k. J Mol Diagn. 2021 Sep;23(9):1065-1077. doi: 10.1016/j.jmoldx.2021.05.016. Epub 2021 Jun 18. J Mol Diagn. 2021. PMID: 34153515 Free PMC article.
Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020.
Bollen N, Artesi M, Durkin K, Hong SL, Potter B, Boujemla B, Vanmechelen B, Martí-Carreras J, Wawina-Bokalanga T, Meex C, Bontems S, Hayette MP, André E, Maes P, Bours V, Baele G, Dellicour S. Bollen N, et al. Among authors: durkin k. Sci Rep. 2021 Sep 17;11(1):18580. doi: 10.1038/s41598-021-97667-9. Sci Rep. 2021. PMID: 34535691 Free PMC article.
Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.
Butera Y, Mukantwari E, Artesi M, Umuringa JD, O'Toole ÁN, Hill V, Rooke S, Hong SL, Dellicour S, Majyambere O, Bontems S, Boujemla B, Quick J, Resende PC, Loman N, Umumararungu E, Kabanda A, Murindahabi MM, Tuyisenge P, Gashegu M, Rwabihama JP, Sindayiheba R, Gikic D, Souopgui J, Ndifon W, Rutayisire R, Gatare S, Mpunga T, Ngamije D, Bours V, Rambaut A, Nsanzimana S, Baele G, Durkin K, Mutesa L, Rujeni N. Butera Y, et al. Among authors: durkin k. Nat Commun. 2021 Sep 29;12(1):5705. doi: 10.1038/s41467-021-25985-7. Nat Commun. 2021. PMID: 34588460 Free PMC article.
Transmission of SARS-CoV-2 After COVID-19 Screening and Mitigation Measures for Primary School Children Attending School in Liège, Belgium.
Meuris C, Kremer C, Geerinck A, Locquet M, Bruyère O, Defêche J, Meex C, Hayette MP, Duchene L, Dellot P, Azarzar S, Maréchal N, Sauvage AS, Frippiat F, Giot JB, Léonard P, Fombellida K, Moutschen M, Durkin K, Artesi M, Bours V, Faes C, Hens N, Darcis G. Meuris C, et al. Among authors: durkin k. JAMA Netw Open. 2021 Oct 1;4(10):e2128757. doi: 10.1001/jamanetworkopen.2021.28757. JAMA Netw Open. 2021. PMID: 34636913 Free PMC article.
Evaluation of Screening Program and Phylogenetic Analysis of SARS-CoV-2 Infections among Hospital Healthcare Workers in Liège, Belgium.
El Moussaoui M, Maes N, Hong SL, Lambert N, Gofflot S, Dellot P, Belhadj Y, Huynen P, Hayette MP, Meex C, Bontems S, Defêche J, Godderis L, Molenberghs G, Meuris C, Artesi M, Durkin K, Rahmouni S, Grégoire C, Beguin Y, Moutschen M, Dellicour S, Darcis G. El Moussaoui M, et al. Among authors: durkin k. Viruses. 2022 Jun 14;14(6):1302. doi: 10.3390/v14061302. Viruses. 2022. PMID: 35746774 Free PMC article.
202 results