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ToPS: a framework to manipulate probabilistic models of sequence data.
Kashiwabara AY, Bonadio I, Onuchic V, Amado F, Mathias R, Durham AM. Kashiwabara AY, et al. Among authors: durham am. PLoS Comput Biol. 2013;9(10):e1003234. doi: 10.1371/journal.pcbi.1003234. Epub 2013 Oct 3. PLoS Comput Biol. 2013. PMID: 24098098 Free PMC article.
Computational Analysis of Transposable Elements and CircRNAs in Plants.
Oliveira LS, Patera AC, Domingues DS, Sanches DS, Lopes FM, Bugatti PH, Saito PTM, Maracaja-Coutinho V, Durham AM, Paschoal AR. Oliveira LS, et al. Among authors: durham am. Methods Mol Biol. 2021;2362:147-172. doi: 10.1007/978-1-0716-1645-1_9. Methods Mol Biol. 2021. PMID: 34195962
Noncoding RNAs Databases: Current Status and Trends.
Maracaja-Coutinho V, Paschoal AR, Caris-Maldonado JC, Borges PV, Ferreira AJ, Durham AM. Maracaja-Coutinho V, et al. Among authors: durham am. Methods Mol Biol. 2019;1912:251-285. doi: 10.1007/978-1-4939-8982-9_10. Methods Mol Biol. 2019. PMID: 30635897 Review.
Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.
Souza GM, Van Sluys MA, Lembke CG, Lee H, Margarido GRA, Hotta CT, Gaiarsa JW, Diniz AL, Oliveira MM, Ferreira SS, Nishiyama MY, Ten-Caten F, Ragagnin GT, Andrade PM, de Souza RF, Nicastro GG, Pandya R, Kim C, Guo H, Durham AM, Carneiro MS, Zhang J, Zhang X, Zhang Q, Ming R, Schatz MC, Davidson B, Paterson AH, Heckerman D. Souza GM, et al. Among authors: durham am. Gigascience. 2019 Dec 1;8(12):giz129. doi: 10.1093/gigascience/giz129. Gigascience. 2019. PMID: 31782791 Free PMC article.
Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma.
Severino P, Oliveira LS, Andreghetto FM, Torres N, Curioni O, Cury PM, Toporcov TN, Paschoal AR, Durham AM. Severino P, et al. Among authors: durham am. BMC Med Genomics. 2015 Jun 24;8:31. doi: 10.1186/s12920-015-0102-4. BMC Med Genomics. 2015. PMID: 26104160 Free PMC article.
High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research.
Severino P, Oliveira LS, Torres N, Andreghetto FM, Klingbeil Mde F, Moyses R, Wünsch-Filho V, Nunes FD, Mathor MB, Paschoal AR, Durham AM. Severino P, et al. Among authors: durham am. BMC Genomics. 2013 Oct 26;14:735. doi: 10.1186/1471-2164-14-735. BMC Genomics. 2013. PMID: 24160351 Free PMC article.
Computational methods in noncoding RNA research.
Machado-Lima A, del Portillo HA, Durham AM. Machado-Lima A, et al. Among authors: durham am. J Math Biol. 2008 Jan;56(1-2):15-49. doi: 10.1007/s00285-007-0122-6. Epub 2007 Sep 4. J Math Biol. 2008. PMID: 17786447 Review.
30 results