Duchene S - Search Results

1

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus.

Weyrich LS, Duchene S, Soubrier J, Arriola L, Llamas B, Breen J, Morris AG, Alt KW, Caramelli D, Dresely V, Farrell M, Farrer AG, Francken M, Gully N, Haak W, Hardy K, Harvati K, Held P, Holmes EC, Kaidonis J, Lalueza-Fox C, de la Rasilla M, Rosas A, Semal P, Soltysiak A, Townsend G, Usai D, Wahl J, Huson DH, Dobney K, Cooper A. Weyrich LS, et al. Among authors: duchene s. Nature. 2017 Apr 20;544(7650):357-361. doi: 10.1038/nature21674. Epub 2017 Mar 8. Nature. 2017. PMID: 28273061 Free article.

2

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates.

Duchêne S, Holmes EC, Ho SY. Duchêne S, et al. Proc Biol Sci. 2014 Jul 7;281(1786):20140732. doi: 10.1098/rspb.2014.0732. Proc Biol Sci. 2014. PMID: 24850916 Free PMC article.

3

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data.

Duchêne S, Duchêne D, Holmes EC, Ho SY. Duchêne S, et al. Among authors: duchene d. Mol Biol Evol. 2015 Jul;32(7):1895-906. doi: 10.1093/molbev/msv056. Epub 2015 Mar 13. Mol Biol Evol. 2015. PMID: 25771196

4

Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models.

Duchêne S, Ho SY, Holmes EC. Duchêne S, et al. BMC Evol Biol. 2015 Mar 11;15:36. doi: 10.1186/s12862-015-0312-6. BMC Evol Biol. 2015. PMID: 25886870 Free PMC article.

5

Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations.

Duchêne DA, Duchêne S, Holmes EC, Ho SY. Duchêne DA, et al. Among authors: duchene s. Mol Biol Evol. 2015 Nov;32(11):2986-95. doi: 10.1093/molbev/msv154. Epub 2015 Jul 10. Mol Biol Evol. 2015. PMID: 26163668 Free PMC article.

6

Substitution Model Adequacy and Assessing the Reliability of Estimates of Virus Evolutionary Rates and Time Scales.

Duchêne S, Di Giallonardo F, Holmes EC. Duchêne S, et al. Mol Biol Evol. 2016 Jan;33(1):255-67. doi: 10.1093/molbev/msv207. Epub 2015 Sep 28. Mol Biol Evol. 2016. PMID: 26416981

7

Cross-validation to select Bayesian hierarchical models in phylogenetics.

Duchêne S, Duchêne DA, Di Giallonardo F, Eden JS, Geoghegan JL, Holt KE, Ho SY, Holmes EC. Duchêne S, et al. Among authors: duchene da. BMC Evol Biol. 2016 May 26;16(1):115. doi: 10.1186/s12862-016-0688-y. BMC Evol Biol. 2016. PMID: 27230264 Free PMC article.

8

Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods.

Duchêne S, Geoghegan JL, Holmes EC, Ho SY. Duchêne S, et al. Bioinformatics. 2016 Nov 15;32(22):3375-3379. doi: 10.1093/bioinformatics/btw421. Epub 2016 Jul 13. Bioinformatics. 2016. PMID: 27412094

9

Benign Rabbit Caliciviruses Exhibit Evolutionary Dynamics Similar to Those of Their Virulent Relatives.

Mahar JE, Nicholson L, Eden JS, Duchêne S, Kerr PJ, Duckworth J, Ward VK, Holmes EC, Strive T. Mahar JE, et al. Among authors: duchene s. J Virol. 2016 Sep 29;90(20):9317-29. doi: 10.1128/JVI.01212-16. Print 2016 Oct 15. J Virol. 2016. PMID: 27512059 Free PMC article.

10

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.

Geoghegan JL, Duchêne S, Holmes EC. Geoghegan JL, et al. Among authors: duchene s. PLoS Pathog. 2017 Feb 8;13(2):e1006215. doi: 10.1371/journal.ppat.1006215. eCollection 2017 Feb. PLoS Pathog. 2017. PMID: 28178344 Free PMC article.

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