Dršata T - Search Results

1

RNA kink-turns are highly anisotropic with respect to lateral displacement of the flanking stems.

Matoušková E, Dršata T, Pfeifferová L, Šponer J, Réblová K, Lankaš F. Matoušková E, et al. Among authors: drsata t. Biophys J. 2022 Mar 1;121(5):705-714. doi: 10.1016/j.bpj.2022.01.025. Epub 2022 Feb 3. Biophys J. 2022. PMID: 35122735 Free PMC article.

2

On the Use of Molecular Dynamics Simulations for Probing Allostery through DNA.

Dršata T, Zgarbová M, Jurečka P, Šponer J, Lankaš F. Dršata T, et al. Biophys J. 2016 Feb 23;110(4):874-6. doi: 10.1016/j.bpj.2015.12.039. Epub 2016 Jan 27. Biophys J. 2016. PMID: 26827073 Free PMC article.

3

rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif.

Dršata T, Réblová K, Beššeová I, Šponer J, Lankaš F. Dršata T, et al. J Chem Theory Comput. 2017 Jul 11;13(7):3359-3371. doi: 10.1021/acs.jctc.7b00061. Epub 2017 Jun 29. J Chem Theory Comput. 2017. PMID: 28617589

4

Effect of 8-oxoguanine on DNA structure and deformability.

Dršata T, Kara M, Zacharias M, Lankaš F. Dršata T, et al. J Phys Chem B. 2013 Oct 3;117(39):11617-22. doi: 10.1021/jp407562t. Epub 2013 Sep 20. J Phys Chem B. 2013. PMID: 24028561

5

Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning.

Dršata T, Špačková N, Jurečka P, Zgarbová M, Šponer J, Lankaš F. Dršata T, et al. Nucleic Acids Res. 2014 Jun;42(11):7383-94. doi: 10.1093/nar/gku338. Epub 2014 May 14. Nucleic Acids Res. 2014. PMID: 24829460 Free PMC article.

6

Multiscale modelling of DNA mechanics.

Dršata T, Lankaš F. Dršata T, et al. J Phys Condens Matter. 2015 Aug 19;27(32):323102. doi: 10.1088/0953-8984/27/32/323102. Epub 2015 Jul 21. J Phys Condens Matter. 2015. PMID: 26194779 Review.

7

Interstrand cross-linking implies contrasting structural consequences for DNA: insights from molecular dynamics.

Bignon E, Dršata T, Morell C, Lankaš F, Dumont E. Bignon E, et al. Among authors: drsata t. Nucleic Acids Res. 2017 Feb 28;45(4):2188-2195. doi: 10.1093/nar/gkw1253. Nucleic Acids Res. 2017. PMID: 27986856 Free PMC article.

8

Impact of the Nucleosome Histone Core on the Structure and Dynamics of DNA-Containing Pyrimidine-Pyrimidone (6-4) Photoproduct.

Matoušková E, Bignon E, Claerbout VEP, Dršata T, Gillet N, Monari A, Dumont E, Lankaš F. Matoušková E, et al. Among authors: drsata t. J Chem Theory Comput. 2020 Sep 8;16(9):5972-5981. doi: 10.1021/acs.jctc.0c00593. Epub 2020 Aug 26. J Chem Theory Comput. 2020. PMID: 32810397

9

Mechanical Model of DNA Allostery.

Dršata T, Zgarbová M, Špačková N, Jurečka P, Šponer J, Lankaš F. Dršata T, et al. J Phys Chem Lett. 2014 Nov 6;5(21):3831-5. doi: 10.1021/jz501826q. Epub 2014 Oct 21. J Phys Chem Lett. 2014. PMID: 26278756

10

Explaining the striking difference in twist-stretch coupling between DNA and RNA: A comparative molecular dynamics analysis.

Liebl K, Drsata T, Lankas F, Lipfert J, Zacharias M. Liebl K, et al. Among authors: drsata t. Nucleic Acids Res. 2015 Dec 2;43(21):10143-56. doi: 10.1093/nar/gkv1028. Epub 2015 Oct 12. Nucleic Acids Res. 2015. PMID: 26464435 Free PMC article.

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