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MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity.
Nat Methods. 2021 Nov;18(11):1294-1303. doi: 10.1038/s41592-021-01291-4. Epub 2021 Nov 1.
Nat Methods. 2021.
PMID: 34725485
Free PMC article.
3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images.
Tasnadi EA, Toth T, Kovacs M, Diosdi A, Pampaloni F, Molnar J, Piccinini F, Horvath P.
Tasnadi EA, et al. Among authors: diosdi a.
Bioinformatics. 2020 May 1;36(9):2948-2949. doi: 10.1093/bioinformatics/btaa029.
Bioinformatics. 2020.
PMID: 31950986
Free PMC article.
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Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates.
Piccinini F, Balassa T, Carbonaro A, Diosdi A, Toth T, Moshkov N, Tasnadi EA, Horvath P.
Piccinini F, et al. Among authors: diosdi a.
Comput Struct Biotechnol J. 2020 Jun 3;18:1287-1300. doi: 10.1016/j.csbj.2020.05.022. eCollection 2020.
Comput Struct Biotechnol J. 2020.
PMID: 32612752
Free PMC article.
Review.
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AnnotatorJ: an ImageJ plugin to ease hand annotation of cellular compartments.
Hollandi R, Diósdi Á, Hollandi G, Moshkov N, Horváth P.
Hollandi R, et al. Among authors: diosdi a.
Mol Biol Cell. 2020 Sep 15;31(20):2179-2186. doi: 10.1091/mbc.E20-02-0156. Epub 2020 Jul 22.
Mol Biol Cell. 2020.
PMID: 32697683
Free PMC article.
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A quantitative metric for the comparative evaluation of optical clearing protocols for 3D multicellular spheroids.
Diosdi A, Hirling D, Kovacs M, Toth T, Harmati M, Koos K, Buzas K, Piccinini F, Horvath P.
Diosdi A, et al.
Comput Struct Biotechnol J. 2021 Feb 4;19:1233-1243. doi: 10.1016/j.csbj.2021.01.040. eCollection 2021.
Comput Struct Biotechnol J. 2021.
PMID: 33717421
Free PMC article.
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Cell lines and clearing approaches: a single-cell level 3D light-sheet fluorescence microscopy dataset of multicellular spheroids.
Diosdi A, Hirling D, Kovacs M, Toth T, Harmati M, Koos K, Buzas K, Piccinini F, Horvath P.
Diosdi A, et al.
Data Brief. 2021 Apr 23;36:107090. doi: 10.1016/j.dib.2021.107090. eCollection 2021 Jun.
Data Brief. 2021.
PMID: 34026984
Free PMC article.
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SpheroidPicker for automated 3D cell culture manipulation using deep learning.
Grexa I, Diosdi A, Harmati M, Kriston A, Moshkov N, Buzas K, Pietiäinen V, Koos K, Horvath P.
Grexa I, et al. Among authors: diosdi a.
Sci Rep. 2021 Jul 20;11(1):14813. doi: 10.1038/s41598-021-94217-1.
Sci Rep. 2021.
PMID: 34285291
Free PMC article.
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Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2.
Pietiäinen V, Polso M, Migh E, Guckelsberger C, Harmati M, Diosdi A, Turunen L, Hassinen A, Potdar S, Koponen A, Sebestyen EG, Kovacs F, Kriston A, Hollandi R, Burian K, Terhes G, Visnyovszki A, Fodor E, Lacza Z, Kantele A, Kolehmainen P, Kakkola L, Strandin T, Levanov L, Kallioniemi O, Kemeny L, Julkunen I, Vapalahti O, Buzas K, Paavolainen L, Horvath P, Hepojoki J.
Pietiäinen V, et al. Among authors: diosdi a.
Cell Rep Methods. 2023 Aug 22;3(8):100565. doi: 10.1016/j.crmeth.2023.100565. eCollection 2023 Aug 28.
Cell Rep Methods. 2023.
PMID: 37671026
Free PMC article.
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