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Standardized annotation of translated open reading frames.
Mudge JM, Ruiz-Orera J, Prensner JR, Brunet MA, Calvet F, Jungreis I, Gonzalez JM, Magrane M, Martinez TF, Schulz JF, Yang YT, Albà MM, Aspden JL, Baranov PV, Bazzini AA, Bruford E, Martin MJ, Calviello L, Carvunis AR, Chen J, Couso JP, Deutsch EW, Flicek P, Frankish A, Gerstein M, Hubner N, Ingolia NT, Kellis M, Menschaert G, Moritz RL, Ohler U, Roucou X, Saghatelian A, Weissman JS, van Heesch S. Mudge JM, et al. Among authors: deutsch ew. Nat Biotechnol. 2022 Jul;40(7):994-999. doi: 10.1038/s41587-022-01369-0. Nat Biotechnol. 2022. PMID: 35831657 Free PMC article. No abstract available.
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
Brusniak MY, Kwok ST, Christiansen M, Campbell D, Reiter L, Picotti P, Kusebauch U, Ramos H, Deutsch EW, Chen J, Moritz RL, Aebersold R. Brusniak MY, et al. Among authors: deutsch ew. BMC Bioinformatics. 2011 Mar 18;12:78. doi: 10.1186/1471-2105-12-78. BMC Bioinformatics. 2011. PMID: 21414234 Free PMC article.
PASSEL: the PeptideAtlas SRMexperiment library.
Farrah T, Deutsch EW, Kreisberg R, Sun Z, Campbell DS, Mendoza L, Kusebauch U, Brusniak MY, Hüttenhain R, Schiess R, Selevsek N, Aebersold R, Moritz RL. Farrah T, et al. Among authors: deutsch ew. Proteomics. 2012 Apr;12(8):1170-5. doi: 10.1002/pmic.201100515. Proteomics. 2012. PMID: 22318887 Free PMC article.
A Bovine PeptideAtlas of milk and mammary gland proteomes.
Bislev SL, Deutsch EW, Sun Z, Farrah T, Aebersold R, Moritz RL, Bendixen E, Codrea MC. Bislev SL, et al. Among authors: deutsch ew. Proteomics. 2012 Sep;12(18):2895-9. doi: 10.1002/pmic.201200057. Proteomics. 2012. PMID: 22837157 Free PMC article.
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.
Picotti P, Clément-Ziza M, Lam H, Campbell DS, Schmidt A, Deutsch EW, Röst H, Sun Z, Rinner O, Reiter L, Shen Q, Michaelson JJ, Frei A, Alberti S, Kusebauch U, Wollscheid B, Moritz RL, Beyer A, Aebersold R. Picotti P, et al. Among authors: deutsch ew. Nature. 2013 Feb 14;494(7436):266-70. doi: 10.1038/nature11835. Epub 2013 Jan 20. Nature. 2013. PMID: 23334424 Free PMC article.
Combining results of multiple search engines in proteomics.
Shteynberg D, Nesvizhskii AI, Moritz RL, Deutsch EW. Shteynberg D, et al. Among authors: deutsch ew. Mol Cell Proteomics. 2013 Sep;12(9):2383-93. doi: 10.1074/mcp.R113.027797. Epub 2013 May 29. Mol Cell Proteomics. 2013. PMID: 23720762 Free PMC article. Review.
A Candida albicans PeptideAtlas.
Vialas V, Sun Z, Loureiro y Penha CV, Carrascal M, Abián J, Monteoliva L, Deutsch EW, Aebersold R, Moritz RL, Gil C. Vialas V, et al. Among authors: deutsch ew. J Proteomics. 2014 Jan 31;97:62-8. doi: 10.1016/j.jprot.2013.06.020. Epub 2013 Jun 26. J Proteomics. 2014. PMID: 23811049 Free PMC article.
188 results