Deplancke B - Search Results

1

Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium.

V'kovski P, Gultom M, Kelly JN, Steiner S, Russeil J, Mangeat B, Cora E, Pezoldt J, Holwerda M, Kratzel A, Laloli L, Wider M, Portmann J, Tran T, Ebert N, Stalder H, Hartmann R, Gardeux V, Alpern D, Deplancke B, Thiel V, Dijkman R. V'kovski P, et al. Among authors: deplancke b. PLoS Biol. 2021 Mar 29;19(3):e3001158. doi: 10.1371/journal.pbio.3001158. eCollection 2021 Mar. PLoS Biol. 2021. PMID: 33780434 Free PMC article.

2

The Genetics of Transcription Factor DNA Binding Variation.

Deplancke B, Alpern D, Gardeux V. Deplancke B, et al. Cell. 2016 Jul 28;166(3):538-554. doi: 10.1016/j.cell.2016.07.012. Cell. 2016. PMID: 27471964 Free article. Review.

3

SMiLE-seq identifies binding motifs of single and dimeric transcription factors.

Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. Isakova A, et al. Among authors: deplancke b. Nat Methods. 2017 Mar;14(3):316-322. doi: 10.1038/nmeth.4143. Epub 2017 Jan 16. Nat Methods. 2017. PMID: 28092692

4

Dissecting the brown adipogenic regulatory network using integrative genomics.

Pradhan RN, Bues JJ, Gardeux V, Schwalie PC, Alpern D, Chen W, Russeil J, Raghav SK, Deplancke B. Pradhan RN, et al. Among authors: deplancke b. Sci Rep. 2017 Feb 9;7:42130. doi: 10.1038/srep42130. Sci Rep. 2017. PMID: 28181539 Free PMC article.

5

ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data.

Gardeux V, David FPA, Shajkofci A, Schwalie PC, Deplancke B. Gardeux V, et al. Among authors: deplancke b. Bioinformatics. 2017 Oct 1;33(19):3123-3125. doi: 10.1093/bioinformatics/btx337. Bioinformatics. 2017. PMID: 28541377 Free PMC article.

6

Profiling of Single-Cell Transcriptomes.

Chen W, Gardeux V, Meireles-Filho A, Deplancke B. Chen W, et al. Among authors: deplancke b. Curr Protoc Mouse Biol. 2017 Sep 8;7(3):145-175. doi: 10.1002/cpmo.30. Curr Protoc Mouse Biol. 2017. PMID: 28884792

7

A stromal cell population that inhibits adipogenesis in mammalian fat depots.

Schwalie PC, Dong H, Zachara M, Russeil J, Alpern D, Akchiche N, Caprara C, Sun W, Schlaudraff KU, Soldati G, Wolfrum C, Deplancke B. Schwalie PC, et al. Among authors: deplancke b. Nature. 2018 Jul;559(7712):103-108. doi: 10.1038/s41586-018-0226-8. Epub 2018 Jun 20. Nature. 2018. PMID: 29925944

8

BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing.

Alpern D, Gardeux V, Russeil J, Mangeat B, Meireles-Filho ACA, Breysse R, Hacker D, Deplancke B. Alpern D, et al. Among authors: deplancke b. Genome Biol. 2019 Apr 19;20(1):71. doi: 10.1186/s13059-019-1671-x. Genome Biol. 2019. PMID: 30999927 Free PMC article.

9

ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer.

Chen W, Schwalie PC, Pankevich EV, Gubelmann C, Raghav SK, Dainese R, Cassano M, Imbeault M, Jang SM, Russeil J, Delessa T, Duc J, Trono D, Wolfrum C, Deplancke B. Chen W, et al. Among authors: deplancke b. Nat Commun. 2019 Apr 18;10(1):1809. doi: 10.1038/s41467-019-09803-9. Nat Commun. 2019. PMID: 31000713 Free PMC article.

10

Sex-dependent and sex-independent regulatory systems of size variation in natural populations.

Okada H, Yagi R, Gardeux V, Deplancke B, Hafen E. Okada H, et al. Among authors: deplancke b. Mol Syst Biol. 2019 Nov;15(11):e9012. doi: 10.15252/msb.20199012. Mol Syst Biol. 2019. PMID: 31777173 Free PMC article.

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