Deplancke B - Search Results

1

A Comprehensive Drosophila melanogaster Transcription Factor Interactome.

Shokri L, Inukai S, Hafner A, Weinand K, Hens K, Vedenko A, Gisselbrecht SS, Dainese R, Bischof J, Furger E, Feuz JD, Basler K, Deplancke B, Bulyk ML. Shokri L, et al. Among authors: deplancke b. Cell Rep. 2019 Apr 16;27(3):955-970.e7. doi: 10.1016/j.celrep.2019.03.071. Cell Rep. 2019. PMID: 30995488 Free PMC article.

2

A gene-centered C. elegans protein-DNA interaction network.

Deplancke B, Mukhopadhyay A, Ao W, Elewa AM, Grove CA, Martinez NJ, Sequerra R, Doucette-Stamm L, Reece-Hoyes JS, Hope IA, Tissenbaum HA, Mango SE, Walhout AJ. Deplancke B, et al. Cell. 2006 Jun 16;125(6):1193-205. doi: 10.1016/j.cell.2006.04.038. Cell. 2006. PMID: 16777607 Free article.

3

DNA-centered approaches to characterize regulatory protein-DNA interaction complexes.

Simicevic J, Deplancke B. Simicevic J, et al. Among authors: deplancke b. Mol Biosyst. 2010 Mar;6(3):462-8. doi: 10.1039/b916137f. Epub 2009 Dec 2. Mol Biosyst. 2010. PMID: 20174675 Free article. Review.

4

WebPrInSeS: automated full-length clone sequence identification and verification using high-throughput sequencing data.

Massouras A, Decouttere F, Hens K, Deplancke B. Massouras A, et al. Among authors: deplancke b. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W378-84. doi: 10.1093/nar/gkq431. Epub 2010 May 25. Nucleic Acids Res. 2010. PMID: 20501601 Free PMC article.

5

GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR.

Gubelmann C, Gattiker A, Massouras A, Hens K, David F, Decouttere F, Rougemont J, Deplancke B. Gubelmann C, et al. Among authors: deplancke b. Database (Oxford). 2011 Sep 14;2011:bar040. doi: 10.1093/database/bar040. Print 2011. Database (Oxford). 2011. PMID: 21917859 Free PMC article.

6

A high-throughput gateway-compatible yeast one-hybrid screen to detect protein-DNA interactions.

Hens K, Feuz JD, Deplancke B. Hens K, et al. Among authors: deplancke b. Methods Mol Biol. 2012;786:335-55. doi: 10.1007/978-1-61779-292-2_20. Methods Mol Biol. 2012. PMID: 21938636

7

Automated protein-DNA interaction screening of Drosophila regulatory elements.

Hens K, Feuz JD, Isakova A, Iagovitina A, Massouras A, Bryois J, Callaerts P, Celniker SE, Deplancke B. Hens K, et al. Among authors: deplancke b. Nat Methods. 2011 Oct 30;8(12):1065-70. doi: 10.1038/nmeth.1763. Nat Methods. 2011. PMID: 22037703 Free PMC article.

8

Topology and dynamics of the zebrafish segmentation clock core circuit.

Schröter C, Ares S, Morelli LG, Isakova A, Hens K, Soroldoni D, Gajewski M, Jülicher F, Maerkl SJ, Deplancke B, Oates AC. Schröter C, et al. Among authors: deplancke b. PLoS Biol. 2012;10(7):e1001364. doi: 10.1371/journal.pbio.1001364. Epub 2012 Jul 24. PLoS Biol. 2012. PMID: 22911291 Free PMC article.

9

Genomic variation and its impact on gene expression in Drosophila melanogaster.

Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles JF, Dermitzakis ET, Stone EA, Jensen JD, Mackay TF, Deplancke B. Massouras A, et al. Among authors: deplancke b. PLoS Genet. 2012;8(11):e1003055. doi: 10.1371/journal.pgen.1003055. Epub 2012 Nov 15. PLoS Genet. 2012. PMID: 23189034 Free PMC article.

10

iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networks.

Rockel S, Geertz M, Hens K, Deplancke B, Maerkl SJ. Rockel S, et al. Among authors: deplancke b. Nucleic Acids Res. 2013 Feb 1;41(4):e52. doi: 10.1093/nar/gks1323. Epub 2012 Dec 20. Nucleic Acids Res. 2013. PMID: 23258699 Free PMC article.

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