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Population Bottlenecks and Intra-host Evolution During Human-to-Human Transmission of SARS-CoV-2.
Wang D, Wang Y, Sun W, Zhang L, Ji J, Zhang Z, Cheng X, Li Y, Xiao F, Zhu A, Zhong B, Ruan S, Li J, Ren P, Ou Z, Xiao M, Li M, Deng Z, Zhong H, Li F, Wang WJ, Zhang Y, Chen W, Zhu S, Xu X, Jin X, Zhao J, Zhong N, Zhang W, Zhao J, Li J, Xu Y. Wang D, et al. Among authors: deng z. Front Med (Lausanne). 2021 Feb 15;8:585358. doi: 10.3389/fmed.2021.585358. eCollection 2021. Front Med (Lausanne). 2021. PMID: 33659260 Free PMC article.
Prophage Hunter: an integrative hunting tool for active prophages.
Song W, Sun HX, Zhang C, Cheng L, Peng Y, Deng Z, Wang D, Wang Y, Hu M, Liu W, Yang H, Shen Y, Li J, You L, Xiao M. Song W, et al. Among authors: deng z. Nucleic Acids Res. 2019 Jul 2;47(W1):W74-W80. doi: 10.1093/nar/gkz380. Nucleic Acids Res. 2019. PMID: 31114893 Free PMC article.
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples.
Xiao M, Liu X, Ji J, Li M, Li J, Yang L, Sun W, Ren P, Yang G, Zhao J, Liang T, Ren H, Chen T, Zhong H, Song W, Wang Y, Deng Z, Zhao Y, Ou Z, Wang D, Cai J, Cheng X, Feng T, Wu H, Gong Y, Yang H, Wang J, Xu X, Zhu S, Chen F, Zhang Y, Chen W, Li Y, Li J. Xiao M, et al. Among authors: deng z. Genome Med. 2020 Jun 30;12(1):57. doi: 10.1186/s13073-020-00751-4. Genome Med. 2020. PMID: 32605661 Free PMC article.
Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients.
Wang Y, Wang D, Zhang L, Sun W, Zhang Z, Chen W, Zhu A, Huang Y, Xiao F, Yao J, Gan M, Li F, Luo L, Huang X, Zhang Y, Wong SS, Cheng X, Ji J, Ou Z, Xiao M, Li M, Li J, Ren P, Deng Z, Zhong H, Xu X, Song T, Mok CKP, Peiris M, Zhong N, Zhao J, Li Y, Li J, Zhao J. Wang Y, et al. Among authors: deng z. Genome Med. 2021 Feb 22;13(1):30. doi: 10.1186/s13073-021-00847-5. Genome Med. 2021. PMID: 33618765 Free PMC article.
Global Landscape of Clostridioides Difficile Phylogeography, Antibiotic Susceptibility, and Toxin Polymorphisms by Post-Hoc Whole-Genome Sequencing from the MODIFY I/II Studies.
Zhao H, Nickle DC, Zeng Z, Law PYT, Wilcox MH, Chen L, Peng Y, Meng J, Deng Z, Albright A, Zhong H, Xu X, Zhu S, Shen J, Blanchard RL, Dorr MB, Shaw PM, Li J. Zhao H, et al. Among authors: deng z. Infect Dis Ther. 2021 Jun;10(2):853-870. doi: 10.1007/s40121-021-00426-6. Epub 2021 Mar 22. Infect Dis Ther. 2021. PMID: 33751421 Free PMC article.
Large-Scale Genomic Epidemiology of Klebsiella pneumoniae Identified Clone Divergence with Hypervirulent Plus Antimicrobial-Resistant Characteristics Causing Within-Ward Strain Transmissions.
Pei N, Li Y, Liu C, Jian Z, Liang T, Zhong Y, Sun W, He J, Cheng X, Li H, Lei X, Liu X, Deng Z, Liu Q, Chen X, Yan Q, Kristiansen K, Li J, Liu W. Pei N, et al. Among authors: deng z. Microbiol Spectr. 2022 Apr 27;10(2):e0269821. doi: 10.1128/spectrum.02698-21. Epub 2022 Apr 13. Microbiol Spectr. 2022. PMID: 35416698 Free PMC article.
1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses.
Zou Y, Xue W, Luo G, Deng Z, Qin P, Guo R, Sun H, Xia Y, Liang S, Dai Y, Wan D, Jiang R, Su L, Feng Q, Jie Z, Guo T, Xia Z, Liu C, Yu J, Lin Y, Tang S, Huo G, Xu X, Hou Y, Liu X, Wang J, Yang H, Kristiansen K, Li J, Jia H, Xiao L. Zou Y, et al. Among authors: deng z. Nat Biotechnol. 2019 Feb;37(2):179-185. doi: 10.1038/s41587-018-0008-8. Epub 2019 Feb 4. Nat Biotechnol. 2019. PMID: 30718868 Free PMC article.
8,010 results