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Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Jackson BR, Tarr C, Strain E, Jackson KA, Conrad A, Carleton H, Katz LS, Stroika S, Gould LH, Mody RK, Silk BJ, Beal J, Chen Y, Timme R, Doyle M, Fields A, Wise M, Tillman G, Defibaugh-Chavez S, Kucerova Z, Sabol A, Roache K, Trees E, Simmons M, Wasilenko J, Kubota K, Pouseele H, Klimke W, Besser J, Brown E, Allard M, Gerner-Smidt P. Jackson BR, et al. Among authors: defibaugh chavez s. Clin Infect Dis. 2016 Aug 1;63(3):380-6. doi: 10.1093/cid/ciw242. Epub 2016 Apr 18. Clin Infect Dis. 2016. PMID: 27090985 Free PMC article.
Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL, Carleton HA, Beal J, Tillman GE, Lindsey RL, Lauer AC, Pightling A, Jarvis KG, Ottesen A, Ramachandran P, Hintz L, Katz LS, Folster JP, Whichard JM, Trees E, Timme RE, McDERMOTT P, Wolpert B, Bazaco M, Zhao S, Lindley S, Bruce BB, Griffin PM, Brown E, Allard M, Tallent S, Irvin K, Hoffmann M, Wise M, Tauxe R, Gerner-Smidt P, Simmons M, Kissler B, Defibaugh-Chavez S, Klimke W, Agarwala R, Lindsay J, Cook K, Austerman SR, Goldman D, McGARRY S, Hale KR, Dessai U, Musser SM, Braden C. Stevens EL, et al. Among authors: defibaugh chavez s. J Food Prot. 2022 May 1;85(5):755-772. doi: 10.4315/JFP-21-437. J Food Prot. 2022. PMID: 35259246 Free article. Review.
Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle.
Crowe SJ, Green A, Hernandez K, Peralta V, Bottichio L, Defibaugh-Chavez S, Douris A, Gieraltowski L, Hise K, La-Pham K, Neil KP, Simmons M, Tillman G, Tolar B, Wagner D, Wasilenko J, Holt K, Trees E, Wise ME. Crowe SJ, et al. Among authors: defibaugh chavez s. J Food Prot. 2017 Apr;80(4):654-660. doi: 10.4315/0362-028X.JFP-16-364. J Food Prot. 2017. PMID: 28294686 Free PMC article.
Multidrug-Resistant Salmonella I 4,[5],12:i:- and Salmonella Infantis Infections Linked to Whole Roasted Pigs from a Single Slaughter and Processing Facility.
Kawakami V, Bottichio L, Lloyd J, Carleton H, Leeper M, Olson G, Li Z, Kissler B, Angelo KM, Whitlock L, Sinatra J, Defibaugh-Chavez S, Bicknese A, Kay M, Wise ME, Basler C, Duchin J. Kawakami V, et al. Among authors: defibaugh chavez s. J Food Prot. 2019 Sep;82(9):1615-1624. doi: 10.4315/0362-028X.JFP-19-048. J Food Prot. 2019. PMID: 31441688 Free PMC article.
National Outbreak of Multidrug Resistant Salmonella Heidelberg Infections Linked to a Single Poultry Company.
Gieraltowski L, Higa J, Peralta V, Green A, Schwensohn C, Rosen H, Libby T, Kissler B, Marsden-Haug N, Booth H, Kimura A, Grass J, Bicknese A, Tolar B, Defibaugh-Chávez S, Williams I, Wise M; Salmonella Heidelberg Investigation Team. Gieraltowski L, et al. Among authors: defibaugh chavez s. PLoS One. 2016 Sep 15;11(9):e0162369. doi: 10.1371/journal.pone.0162369. eCollection 2016. PLoS One. 2016. PMID: 27631492 Free PMC article.
Intensified Sampling in Response to a Salmonella Heidelberg Outbreak Associated with Multiple Establishments Within a Single Poultry Corporation.
Green A, Defibaugh-Chavez S, Douris A, Vetter D, Atkinson R, Kissler B, Khroustalev A, Robertson K, Sharma Y, Becker K, Dessai U, Antoine N, Allen L, Holt K, Gieraltowski L, Wise M, Schwensohn C. Green A, et al. Among authors: defibaugh chavez s. Foodborne Pathog Dis. 2018 Mar;15(3):153-160. doi: 10.1089/fpd.2017.2340. Epub 2018 Jan 2. Foodborne Pathog Dis. 2018. PMID: 29638165 Free PMC article.