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Protocol for structure determination of SARS-CoV-2 main protease at near-physiological-temperature by serial femtosecond crystallography.
Ertem FB, Guven O, Buyukdag C, Gocenler O, Ayan E, Yuksel B, Gul M, Usta G, Cakılkaya B, Johnson JA, Dao EH, Su Z, Poitevin F, Yoon CH, Kupitz C, Hayes B, Liang M, Hunter MS, Batyuk A, Sierra RG, Ketawala G, Botha S, Dağ Ç, DeMirci H. Ertem FB, et al. Among authors: demirci h. STAR Protoc. 2022 Jan 24;3(1):101158. doi: 10.1016/j.xpro.2022.101158. eCollection 2022 Mar 18. STAR Protoc. 2022. PMID: 35194584 Free PMC article.
Serial femtosecond X-ray diffraction of 30S ribosomal subunit microcrystals in liquid suspension at ambient temperature using an X-ray free-electron laser.
Demirci H, Sierra RG, Laksmono H, Shoeman RL, Botha S, Barends TR, Nass K, Schlichting I, Doak RB, Gati C, Williams GJ, Boutet S, Messerschmidt M, Jogl G, Dahlberg AE, Gregory ST, Bogan MJ. Demirci H, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Sep;69(Pt 9):1066-9. doi: 10.1107/S174430911302099X. Epub 2013 Aug 19. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013. PMID: 23989164 Free PMC article.
Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II.
Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster AS, Young ID, Michels-Clark T, Aquila A, Liang M, Hunter MS, Koglin JE, Boutet S, Junco EA, Hayes B, Bogan MJ, Hampton CY, Puglisi EV, Sauter NK, Stan CA, Zouni A, Yano J, Yachandra VK, Soltis SM, Puglisi JD, DeMirci H. Sierra RG, et al. Among authors: demirci h. Nat Methods. 2016 Jan;13(1):59-62. doi: 10.1038/nmeth.3667. Epub 2015 Nov 30. Nat Methods. 2016. PMID: 26619013 Free PMC article.
Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser.
Hunter MS, Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Ciftci H, Guillet S, Hayes MJ, Lane TJ, Liang M, Lundström U, Koglin JE, Mgbam P, Rao Y, Zhang L, Wakatsuki S, Holton JM, Boutet S. Hunter MS, et al. Among authors: demirci h. Nat Commun. 2016 Nov 4;7:13388. doi: 10.1038/ncomms13388. Nat Commun. 2016. PMID: 27811937 Free PMC article.
Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin.
Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Batyuk A, Ciftci H, Guillet S, Hayes MJ, Hayes B, Lane TJ, Liang M, Lundström U, Koglin JE, Mgbam P, Rao Y, Rendahl T, Rodriguez E, Zhang L, Wakatsuki S, Boutet S, Holton JM, Hunter MS. Yoon CH, et al. Among authors: demirci h. Sci Data. 2017 Apr 25;4:170055. doi: 10.1038/sdata.2017.55. Sci Data. 2017. PMID: 28440794 Free PMC article.
Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.
Kurta RP, Donatelli JJ, Yoon CH, Berntsen P, Bielecki J, Daurer BJ, DeMirci H, Fromme P, Hantke MF, Maia FRNC, Munke A, Nettelblad C, Pande K, Reddy HKN, Sellberg JA, Sierra RG, Svenda M, van der Schot G, Vartanyants IA, Williams GJ, Xavier PL, Aquila A, Zwart PH, Mancuso AP. Kurta RP, et al. Among authors: demirci h. Phys Rev Lett. 2017 Oct 13;119(15):158102. doi: 10.1103/PhysRevLett.119.158102. Epub 2017 Oct 12. Phys Rev Lett. 2017. PMID: 29077445 Free PMC article.
Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature.
O'Sullivan ME, Poitevin F, Sierra RG, Gati C, Dao EH, Rao Y, Aksit F, Ciftci H, Corsepius N, Greenhouse R, Hayes B, Hunter MS, Liang M, McGurk A, Mbgam P, Obrinsky T, Pardo-Avila F, Seaberg MH, Cheng AG, Ricci AJ, DeMirci H. O'Sullivan ME, et al. Among authors: demirci h. Nucleic Acids Res. 2018 Oct 12;46(18):9793-9804. doi: 10.1093/nar/gky693. Nucleic Acids Res. 2018. PMID: 30113694 Free PMC article.
Structure of the 30S ribosomal decoding complex at ambient temperature.
Dao EH, Poitevin F, Sierra RG, Gati C, Rao Y, Ciftci HI, Akşit F, McGurk A, Obrinski T, Mgbam P, Hayes B, De Lichtenberg C, Pardo-Avila F, Corsepius N, Zhang L, Seaberg MH, Hunter MS, Liang M, Koglin JE, Wakatsuki S, Demirci H. Dao EH, et al. Among authors: demirci h. RNA. 2018 Dec;24(12):1667-1676. doi: 10.1261/rna.067660.118. Epub 2018 Aug 23. RNA. 2018. PMID: 30139800 Free PMC article.
The Macromolecular Femtosecond Crystallography Instrument at the Linac Coherent Light Source.
Sierra RG, Batyuk A, Sun Z, Aquila A, Hunter MS, Lane TJ, Liang M, Yoon CH, Alonso-Mori R, Armenta R, Castagna JC, Hollenbeck M, Osier TO, Hayes M, Aldrich J, Curtis R, Koglin JE, Rendahl T, Rodriguez E, Carbajo S, Guillet S, Paul R, Hart P, Nakahara K, Carini G, DeMirci H, Dao EH, Hayes BM, Rao YP, Chollet M, Feng Y, Fuller FD, Kupitz C, Sato T, Seaberg MH, Song S, van Driel TB, Yavas H, Zhu D, Cohen AE, Wakatsuki S, Boutet S. Sierra RG, et al. Among authors: demirci h. J Synchrotron Radiat. 2019 Mar 1;26(Pt 2):346-357. doi: 10.1107/S1600577519001577. Epub 2019 Feb 22. J Synchrotron Radiat. 2019. PMID: 30855242 Free PMC article.
413 results