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Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
De Maio N, Shaw LP, Hubbard A, George S, Sanderson ND, Swann J, Wick R, AbuOun M, Stubberfield E, Hoosdally SJ, Crook DW, Peto TEA, Sheppard AE, Bailey MJ, Read DS, Anjum MF, Walker AS, Stoesser N, On Behalf Of The Rehab Consortium. De Maio N, et al. Microb Genom. 2019 Sep;5(9):e000294. doi: 10.1099/mgen.0.000294. Epub 2019 Aug 30. Microb Genom. 2019. PMID: 31483244 Free PMC article.
Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission.
Martin J, Phan HTT, Findlay J, Stoesser N, Pankhurst L, Navickaite I, De Maio N, Eyre DW, Toogood G, Orsi NM, Kirby A, Young N, Turton JF, Hill RLR, Hopkins KL, Woodford N, Peto TEA, Walker AS, Crook DW, Wilcox MH. Martin J, et al. Among authors: de maio n. J Antimicrob Chemother. 2017 Nov 1;72(11):3025-3034. doi: 10.1093/jac/dkx264. J Antimicrob Chemother. 2017. PMID: 28961793 Free PMC article.
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
Gweon HS, Shaw LP, Swann J, De Maio N, AbuOun M, Niehus R, Hubbard ATM, Bowes MJ, Bailey MJ, Peto TEA, Hoosdally SJ, Walker AS, Sebra RP, Crook DW, Anjum MF, Read DS, Stoesser N; REHAB consortium. Gweon HS, et al. Among authors: de maio n. Environ Microbiome. 2019 Oct 24;14(1):7. doi: 10.1186/s40793-019-0347-1. Environ Microbiome. 2019. PMID: 33902704 Free PMC article.
Genomic network analysis of environmental and livestock F-type plasmid populations.
Matlock W, Chau KK, AbuOun M, Stubberfield E, Barker L, Kavanagh J, Pickford H, Gilson D, Smith RP, Gweon HS, Hoosdally SJ, Swann J, Sebra R, Bailey MJ, Peto TEA, Crook DW, Anjum MF, Read DS, Walker AS, Stoesser N, Shaw LP; REHAB consortium. Matlock W, et al. ISME J. 2021 Aug;15(8):2322-2335. doi: 10.1038/s41396-021-00926-w. Epub 2021 Mar 1. ISME J. 2021. PMID: 33649550 Free PMC article.
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131.
Stoesser N, Sheppard AE, Pankhurst L, De Maio N, Moore CE, Sebra R, Turner P, Anson LW, Kasarskis A, Batty EM, Kos V, Wilson DJ, Phetsouvanh R, Wyllie D, Sokurenko E, Manges AR, Johnson TJ, Price LB, Peto TE, Johnson JR, Didelot X, Walker AS, Crook DW; Modernizing Medical Microbiology Informatics Group (MMMIG). Stoesser N, et al. Among authors: de maio n. mBio. 2016 Mar 22;7(2):e02162. doi: 10.1128/mBio.02162-15. mBio. 2016. PMID: 27006459 Free PMC article.
The Bacterial Sequential Markov Coalescent.
De Maio N, Wilson DJ. De Maio N, et al. Genetics. 2017 May;206(1):333-343. doi: 10.1534/genetics.116.198796. Epub 2017 Mar 3. Genetics. 2017. PMID: 28258183 Free PMC article.
58 results