Daly R - Search Results

1

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions.

Hjörleifsson Eldjárn G, Ramsay A, van der Hooft JJJ, Duncan KR, Soldatou S, Rousu J, Daly R, Wandy J, Rogers S. Hjörleifsson Eldjárn G, et al. Among authors: daly r. PLoS Comput Biol. 2021 May 4;17(5):e1008920. doi: 10.1371/journal.pcbi.1008920. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33945539 Free PMC article.

2

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach.

Daly R, Rogers S, Wandy J, Jankevics A, Burgess KE, Breitling R. Daly R, et al. Bioinformatics. 2014 Oct;30(19):2764-71. doi: 10.1093/bioinformatics/btu370. Epub 2014 Jun 9. Bioinformatics. 2014. PMID: 24916385 Free PMC article.

3

Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets.

Wandy J, Daly R, Breitling R, Rogers S. Wandy J, et al. Among authors: daly r. Bioinformatics. 2015 Jun 15;31(12):1999-2006. doi: 10.1093/bioinformatics/btv072. Epub 2015 Feb 2. Bioinformatics. 2015. PMID: 25649621 Free PMC article.

4

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.

Gloaguen Y, Morton F, Daly R, Gurden R, Rogers S, Wandy J, Wilson D, Barrett M, Burgess K. Gloaguen Y, et al. Among authors: daly r. Bioinformatics. 2017 Dec 15;33(24):4007-4009. doi: 10.1093/bioinformatics/btx499. Bioinformatics. 2017. PMID: 28961954 Free PMC article.

5

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry.

Wandy J, Zhu Y, van der Hooft JJJ, Daly R, Barrett MP, Rogers S. Wandy J, et al. Among authors: daly r. Bioinformatics. 2018 Jan 15;34(2):317-318. doi: 10.1093/bioinformatics/btx582. Bioinformatics. 2018. PMID: 28968802 Free PMC article.

6

ShinyKGode: an interactive application for ODE parameter inference using gradient matching.

Wandy J, Niu M, Giurghita D, Daly R, Rogers S, Husmeier D. Wandy J, et al. Among authors: daly r. Bioinformatics. 2018 Jul 1;34(13):2314-2315. doi: 10.1093/bioinformatics/bty089. Bioinformatics. 2018. PMID: 29490021 Free PMC article.

7

In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics.

Wandy J, Davies V, J J van der Hooft J, Weidt S, Daly R, Rogers S. Wandy J, et al. Among authors: daly r. Metabolites. 2019 Oct 9;9(10):219. doi: 10.3390/metabo9100219. Metabolites. 2019. PMID: 31600991 Free PMC article.

8

Ranking Metabolite Sets by Their Activity Levels.

McLuskey K, Wandy J, Vincent I, van der Hooft JJJ, Rogers S, Burgess K, Daly R. McLuskey K, et al. Among authors: daly r. Metabolites. 2021 Feb 11;11(2):103. doi: 10.3390/metabo11020103. Metabolites. 2021. PMID: 33670102 Free PMC article.

9

Rapid Development of Improved Data-Dependent Acquisition Strategies.

Davies V, Wandy J, Weidt S, van der Hooft JJJ, Miller A, Daly R, Rogers S. Davies V, et al. Among authors: daly r. Anal Chem. 2021 Apr 13;93(14):5676-5683. doi: 10.1021/acs.analchem.0c03895. Epub 2021 Mar 30. Anal Chem. 2021. PMID: 33784814 Free PMC article.

10

GraphOmics: an interactive platform to explore and integrate multi-omics data.

Wandy J, Daly R. Wandy J, et al. Among authors: daly r. BMC Bioinformatics. 2021 Dec 18;22(1):603. doi: 10.1186/s12859-021-04500-1. BMC Bioinformatics. 2021. PMID: 34922446 Free PMC article.

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