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RResolver: efficient short-read repeat resolution within ABySS.
Nikolić V, Afshinfard A, Chu J, Wong J, Coombe L, Nip KM, Warren RL, Birol I. Nikolić V, et al. Among authors: coombe l. BMC Bioinformatics. 2022 Jun 21;23(1):246. doi: 10.1186/s12859-022-04790-z. BMC Bioinformatics. 2022. PMID: 35729491 Free PMC article.
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.
Jackman SD, Vandervalk BP, Mohamadi H, Chu J, Yeo S, Hammond SA, Jahesh G, Khan H, Coombe L, Warren RL, Birol I. Jackman SD, et al. Among authors: coombe l. Genome Res. 2017 May;27(5):768-777. doi: 10.1101/gr.214346.116. Epub 2017 Feb 23. Genome Res. 2017. PMID: 28232478 Free PMC article.
ARCS: scaffolding genome drafts with linked reads.
Yeo S, Coombe L, Warren RL, Chu J, Birol I. Yeo S, et al. Among authors: coombe l. Bioinformatics. 2018 Mar 1;34(5):725-731. doi: 10.1093/bioinformatics/btx675. Bioinformatics. 2018. PMID: 29069293 Free PMC article.
Tigmint: correcting assembly errors using linked reads from large molecules.
Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol I. Jackman SD, et al. Among authors: coombe l. BMC Bioinformatics. 2018 Oct 26;19(1):393. doi: 10.1186/s12859-018-2425-6. BMC Bioinformatics. 2018. PMID: 30367597 Free PMC article.
The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis.
Taylor GA, Kirk H, Coombe L, Jackman SD, Chu J, Tse K, Cheng D, Chuah E, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, Moore R, Birol I, Franke M, Marra MA, Dutton C, Jones SJM. Taylor GA, et al. Among authors: coombe l. Genes (Basel). 2018 Nov 30;9(12):598. doi: 10.3390/genes9120598. Genes (Basel). 2018. PMID: 30513700 Free PMC article.
ntEdit: scalable genome sequence polishing.
Warren RL, Coombe L, Mohamadi H, Zhang J, Jaquish B, Isabel N, Jones SJM, Bousquet J, Bohlmann J, Birol I. Warren RL, et al. Among authors: coombe l. Bioinformatics. 2019 Nov 1;35(21):4430-4432. doi: 10.1093/bioinformatics/btz400. Bioinformatics. 2019. PMID: 31095290 Free PMC article.
Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada.
Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Jaquish B, Isabel N, Bousquet J, Jones SJM, Bohlmann J, Birol I. Lin D, et al. Among authors: coombe l. Microbiol Resour Announc. 2019 Jun 6;8(23):e00381-19. doi: 10.1128/MRA.00381-19. Microbiol Resour Announc. 2019. PMID: 31171622 Free PMC article.
Complete Chloroplast Genome Sequence of an Engelmann Spruce (Picea engelmannii, Genotype Se404-851) from Western Canada.
Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, McDonald H, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Doerksen T, Jaquish B, Bousquet J, Jones SJM, Bohlmann J, Birol I. Lin D, et al. Among authors: coombe l. Microbiol Resour Announc. 2019 Jun 13;8(24):e00382-19. doi: 10.1128/MRA.00382-19. Microbiol Resour Announc. 2019. PMID: 31196920 Free PMC article.
39 results