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NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements.
Connor R, Brister R, Buchmann JP, Deboutte W, Edwards R, Martí-Carreras J, Tisza M, Zalunin V, Andrade-Martínez J, Cantu A, D'Amour M, Efremov A, Fleischmann L, Forero-Junco L, Garmaeva S, Giluso M, Glickman C, Henderson M, Kellman B, Kristensen D, Leubsdorf C, Levi K, Levi S, Pakala S, Peddu V, Ponsero A, Ribeiro E, Roy F, Rutter L, Saha S, Shakya M, Shean R, Miller M, Tully B, Turkington C, Youens-Clark K, Vanmechelen B, Busby B. Connor R, et al. Genes (Basel). 2019 Sep 16;10(9):714. doi: 10.3390/genes10090714. Genes (Basel). 2019. PMID: 31527408 Free PMC article.
NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index.
Martí-Carreras J, Gener AR, Miller SD, Brito AF, Camacho CE, Connor R, Deboutte W, Glickman C, Kristensen DM, Meyer WK, Modha S, Norris AL, Saha S, Belford AK, Biederstedt E, Brister JR, Buchmann JP, Cooley NP, Edwards RA, Javkar K, Muchow M, Muralidharan HS, Pepe-Ranney C, Shah N, Shakya M, Tisza MJ, Tully BJ, Vanmechelen B, Virta VC, Weissman JL, Zalunin V, Efremov A, Busby B. Martí-Carreras J, et al. Among authors: connor r. Viruses. 2020 Dec 10;12(12):1424. doi: 10.3390/v12121424. Viruses. 2020. PMID: 33322070 Free PMC article.
Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance.
Connor R, Yarmosh DA, Maier W, Shakya M, Martin R, Bradford R, Brister JR, Chain PS, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Pruitt KD. Connor R, et al. bioRxiv [Preprint]. 2022 Nov 3:2022.11.03.515010. doi: 10.1101/2022.11.03.515010. bioRxiv. 2022. PMID: 36380755 Free PMC article. Updated. Preprint.
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Connor R, Shakya M, Yarmosh DA, Maier W, Martin R, Bradford R, Brister JR, Chain PSG, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Purcell L, Pruitt KD. Connor R, et al. Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430. Viruses. 2024. PMID: 38543795 Free PMC article.
Database resources of the National Center for Biotechnology Information.
Sayers EW, Agarwala R, Bolton EE, Brister JR, Canese K, Clark K, Connor R, Fiorini N, Funk K, Hefferon T, Holmes JB, Kim S, Kimchi A, Kitts PA, Lathrop S, Lu Z, Madden TL, Marchler-Bauer A, Phan L, Schneider VA, Schoch CL, Pruitt KD, Ostell J. Sayers EW, et al. Among authors: connor r. Nucleic Acids Res. 2019 Jan 8;47(D1):D23-D28. doi: 10.1093/nar/gky1069. Nucleic Acids Res. 2019. PMID: 30395293 Free PMC article.
Database resources of the national center for biotechnology information.
Sayers EW, Bolton EE, Brister JR, Canese K, Chan J, Comeau DC, Connor R, Funk K, Kelly C, Kim S, Madej T, Marchler-Bauer A, Lanczycki C, Lathrop S, Lu Z, Thibaud-Nissen F, Murphy T, Phan L, Skripchenko Y, Tse T, Wang J, Williams R, Trawick BW, Pruitt KD, Sherry ST. Sayers EW, et al. Among authors: connor r. Nucleic Acids Res. 2022 Jan 7;50(D1):D20-D26. doi: 10.1093/nar/gkab1112. Nucleic Acids Res. 2022. PMID: 34850941 Free PMC article.
Database resources of the National Center for Biotechnology Information.
Sayers EW, Beck J, Bolton EE, Brister JR, Chan J, Comeau DC, Connor R, DiCuccio M, Farrell CM, Feldgarden M, Fine AM, Funk K, Hatcher E, Hoeppner M, Kane M, Kannan S, Katz KS, Kelly C, Klimke W, Kim S, Kimchi A, Landrum M, Lathrop S, Lu Z, Malheiro A, Marchler-Bauer A, Murphy TD, Phan L, Prasad AB, Pujar S, Sawyer A, Schmieder E, Schneider VA, Schoch CL, Sharma S, Thibaud-Nissen F, Trawick BW, Venkatapathi T, Wang J, Pruitt KD, Sherry ST. Sayers EW, et al. Among authors: connor r. Nucleic Acids Res. 2024 Jan 5;52(D1):D33-D43. doi: 10.1093/nar/gkad1044. Nucleic Acids Res. 2024. PMID: 37994677 Free PMC article.
The Global Virome in One Network (VIRION): an Atlas of Vertebrate-Virus Associations.
Carlson CJ, Gibb RJ, Albery GF, Brierley L, Connor RP, Dallas TA, Eskew EA, Fagre AC, Farrell MJ, Frank HK, Muylaert RL, Poisot T, Rasmussen AL, Ryan SJ, Seifert SN. Carlson CJ, et al. mBio. 2022 Apr 26;13(2):e0298521. doi: 10.1128/mbio.02985-21. Epub 2022 Mar 1. mBio. 2022. PMID: 35229639 Free PMC article.
392 results